Detail information of GWHGAAEX011629/evm.TU.scaffold_385.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG11092.00E-149Vacuole membrane protein VMP1
nrgi|695037126|ref|XP_009406044.1|1.79E-177PREDICTED: vacuole membrane protein 1-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q5XF36|KMS1_ARATH6.00E-166Vacuole membrane protein KMS1 {ECO:0000303|PubMed:21294794}
trEMBLtr|M0SIY2|M0SIY2_MUSAM4.00E-176Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P29660_001}
TAIRAT1G053602.00E-149Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000003772736654189+
Transcript Sequence

Network for GWHGAAEX011629

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K21248VMP1 Autophagy - animal map04140

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms34.950
SRR2545915Juvenile tuber34.590
SRP108465SRR5643513five period of Gastrodia elata29.410
SRR5643514five period of Gastrodia elata25.950
SRR5643515five period of Gastrodia elata25.130
SRR5643524five period of Gastrodia elata28.570
SRR5643525five period of Gastrodia elata42.770
SRR5643528five period of Gastrodia elata57.580
SRR5643658five period of Gastrodia elata54.790
SRR5643659five period of Gastrodia elata18.600
SRR5643660five period of Gastrodia elata15.740
SRR5643661five period of Gastrodia elata14.210
SRR5643662five period of Gastrodia elata14.940
SRR5643663five period of Gastrodia elata16.700
SRR5643664five period of Gastrodia elata12.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_133.870
SRR6049655Rhizomagastrodiae_C368-T10_good_134.840
SRR6049656Rhizomagastrodiae_C368-T07_good_136.950
SRR6049657Rhizomagastrodiae_C368-T07_good_141.260
SRR6049658Rhizomagastrodiae_C368-T04_good_149.970
SRR6049659Rhizomagastrodiae_C368-T04_good_162.280
SRR6049660Rhizomagastrodiae_C368-T01_good_144.590
SRR6049661Rhizomagastrodiae_C368-T04_good_152.090
SRR6049662Rhizomagastrodiae_C368-T01_good_138.560
SRR6049663Rhizomagastrodiae_C368-T01_good_144.430
SRR6049664Rhizomagastrodiae_C368-T10_good_135.760
SRR6049665Rhizomagastrodiae_C368-T10_good_135.760
SRP279888GastroGastrodia elata tuber 23.86
JuvenJuvenile tuber20.59
Mother_GastroMother tuber of Gastrodia elata 59.28
Mother_JuvenMother tuber of Juvenile 45.84