Detail information of GWHGAAEX011630/evm.TU.scaffold_385.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG28501.00E-57Predicted peptidoglycan-binding protein, contains LysM domain
nrgi|695017301|ref|XP_009395585.1|1.20E-69PREDICTED: F-box protein At1g55000-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9FZ32|FB60_ARATH3.00E-58F-box protein At1g55000
trEMBLtr|M0SLQ4|M0SLQ4_MUSAM4.00E-70Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P06870_001}
TAIRAT1G550001.00E-57peptidoglycan-binding LysM domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000003775448859546-
Transcript Sequence

Network for GWHGAAEX011630

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.6F-box-like12485.90E-09
PF01476.19LysM841243.20E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.470
SRR2545915Juvenile tuber8.600
SRP108465SRR5643513five period of Gastrodia elata22.550
SRR5643514five period of Gastrodia elata9.550
SRR5643515five period of Gastrodia elata11.380
SRR5643524five period of Gastrodia elata15.050
SRR5643525five period of Gastrodia elata14.980
SRR5643528five period of Gastrodia elata8.530
SRR5643658five period of Gastrodia elata9.240
SRR5643659five period of Gastrodia elata7.370
SRR5643660five period of Gastrodia elata7.680
SRR5643661five period of Gastrodia elata6.740
SRR5643662five period of Gastrodia elata11.140
SRR5643663five period of Gastrodia elata5.670
SRR5643664five period of Gastrodia elata6.220
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.350
SRR6049655Rhizomagastrodiae_C368-T10_good_140.360
SRR6049656Rhizomagastrodiae_C368-T07_good_117.580
SRR6049657Rhizomagastrodiae_C368-T07_good_118.690
SRR6049658Rhizomagastrodiae_C368-T04_good_17.990
SRR6049659Rhizomagastrodiae_C368-T04_good_116.830
SRR6049660Rhizomagastrodiae_C368-T01_good_110.980
SRR6049661Rhizomagastrodiae_C368-T04_good_117.650
SRR6049662Rhizomagastrodiae_C368-T01_good_112.860
SRR6049663Rhizomagastrodiae_C368-T01_good_110.410
SRR6049664Rhizomagastrodiae_C368-T10_good_120.650
SRR6049665Rhizomagastrodiae_C368-T10_good_120.650
SRP279888GastroGastrodia elata tuber 13.42
JuvenJuvenile tuber33.05
Mother_GastroMother tuber of Gastrodia elata 17.93
Mother_JuvenMother tuber of Juvenile 21.15