Detail information of GWHGAAEX011634/evm.TU.scaffold_39.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|224369457|ref|YP_002603621.1|1.00E-124protein Glprotein GB2 [Desulfobacterium autotrophicum HRM2]
KOGKOG047001,4-alpha-glucan branching enzyme/starch branching enzyme II
nrgi|743800901|ref|XP_010926175.1|0PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X1 [Elaeis guineensis]
Swissprottr|D2WL32|GLGB3_ARATH01,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic (Precursor)
trEMBLtr|M0T6Q1|M0T6Q1_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P13530_001}
TAIRAT3G204400Alpha amylase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000035167921300378-
Transcript Sequence

Network for GWHGAAEX011634

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02922.17CBM_481231973.70E-07
PF00128.23Alpha-amylase4255163.50E-08
PF02806.17Alpha-amylase_C8048941.10E-15
Protein Sequence

Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM48

KEGG pathway

KO Enzyme pathway mapID
K00700GBE1, glgB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500

Gene Ontology

GO term OntologyName
GO:0005978Biological Processglycogen biosynthetic process
GO:0005975Biological Processcarbohydrate metabolic process
GO:0003844Molecular Function1,4-alpha-glucan branching enzyme activity
GO:0003824Molecular Functioncatalytic activity
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0043169Molecular Functioncation binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.130
SRR2545915Juvenile tuber15.750
SRP108465SRR5643513five period of Gastrodia elata11.860
SRR5643514five period of Gastrodia elata13.630
SRR5643515five period of Gastrodia elata9.960
SRR5643524five period of Gastrodia elata13.330
SRR5643525five period of Gastrodia elata2.660
SRR5643528five period of Gastrodia elata3.080
SRR5643658five period of Gastrodia elata2.950
SRR5643659five period of Gastrodia elata4.280
SRR5643660five period of Gastrodia elata5.980
SRR5643661five period of Gastrodia elata5.750
SRR5643662five period of Gastrodia elata4.840
SRR5643663five period of Gastrodia elata4.220
SRR5643664five period of Gastrodia elata4.130
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.210
SRR6049655Rhizomagastrodiae_C368-T10_good_18.630
SRR6049656Rhizomagastrodiae_C368-T07_good_113.430
SRR6049657Rhizomagastrodiae_C368-T07_good_112.360
SRR6049658Rhizomagastrodiae_C368-T04_good_114.880
SRR6049659Rhizomagastrodiae_C368-T04_good_115.560
SRR6049660Rhizomagastrodiae_C368-T01_good_114.020
SRR6049661Rhizomagastrodiae_C368-T04_good_115.180
SRR6049662Rhizomagastrodiae_C368-T01_good_114.210
SRR6049663Rhizomagastrodiae_C368-T01_good_114.630
SRR6049664Rhizomagastrodiae_C368-T10_good_111.270
SRR6049665Rhizomagastrodiae_C368-T10_good_111.270
SRP279888GastroGastrodia elata tuber 11.80
JuvenJuvenile tuber14.06
Mother_GastroMother tuber of Gastrodia elata 18.46
Mother_JuvenMother tuber of Juvenile 9.86