Detail information of GWHGAAEX011642/evm.TU.scaffold_39.14
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 6.00E-55 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|695065755|ref|XP_009421476.1| | 0 | PREDICTED: receptor-like protein kinase HSL1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SGP2|HSL1_ARATH | 0 | Receptor-like protein kinase HSL1 (Precursor) |
| trEMBL | tr|I1HDR5|I1HDR5_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G08350.1} |
| TAIR | AT1G28440 | 0 | HAESA-like 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000035 | 1068690 | 1074591 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011642
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 32 | 71 | 2.50E-12 |
| PF00560.32 | LRR_1 | 148 | 166 | 1.5 |
| PF00560.32 | LRR_1 | 220 | 242 | 0.7 |
| PF00560.32 | LRR_1 | 245 | 266 | 0.94 |
| PF00069.24 | Pkinase | 697 | 922 | 3.30E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.770 |
| SRR2545915 | Juvenile tuber | 7.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.770 |
| SRR5643514 | five period of Gastrodia elata | 15.290 | |
| SRR5643515 | five period of Gastrodia elata | 10.350 | |
| SRR5643524 | five period of Gastrodia elata | 12.920 | |
| SRR5643525 | five period of Gastrodia elata | 12.820 | |
| SRR5643528 | five period of Gastrodia elata | 10.820 | |
| SRR5643658 | five period of Gastrodia elata | 12.410 | |
| SRR5643659 | five period of Gastrodia elata | 9.780 | |
| SRR5643660 | five period of Gastrodia elata | 7.460 | |
| SRR5643661 | five period of Gastrodia elata | 9.050 | |
| SRR5643662 | five period of Gastrodia elata | 8.790 | |
| SRR5643663 | five period of Gastrodia elata | 9.400 | |
| SRR5643664 | five period of Gastrodia elata | 10.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 27.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.720 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.95 |
| Juven | Juvenile tuber | 16.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.09 | |
| Mother_Juven | Mother tuber of Juvenile | 2.96 |