Detail information of GWHGAAEX011646/evm.TU.scaffold_39.29


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|154707125|ref|YP_001424409.1|1.00E-68lignostilbene-alpha,beta-dioxygenase [Coxiella burnetii Dugway 5J108-111]
KOGKOG12850Beta, beta-carotene 15,15'-dioxygenase and related enzymes
nrgi|743796224|ref|XP_010924674.1|0PREDICTED: carotenoid cleavage dioxygenase 8 homolog B, chloroplastic-like [Elaeis guineensis]
Swissprottr|Q8LIY8|CCD8B_ORYSJ0Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic (Precursor)
trEMBLtr|F6H3D5|F6H3D5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB46699.1}
TAIRAT4G328100carotenoid cleavage dioxygenase 8

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003518833711988237+
Transcript Sequence

Network for GWHGAAEX011646

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03055.14RPE65915632.10E-90
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17913CCD8 Biosynthesis of secondary metabolites map01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0016702Molecular Functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.790
SRR2545915Juvenile tuber17.970
SRP108465SRR5643513five period of Gastrodia elata14.140
SRR5643514five period of Gastrodia elata26.460
SRR5643515five period of Gastrodia elata17.320
SRR5643524five period of Gastrodia elata20.490
SRR5643525five period of Gastrodia elata52.310
SRR5643528five period of Gastrodia elata31.450
SRR5643658five period of Gastrodia elata67.770
SRR5643659five period of Gastrodia elata23.610
SRR5643660five period of Gastrodia elata23.120
SRR5643661five period of Gastrodia elata26.880
SRR5643662five period of Gastrodia elata22.580
SRR5643663five period of Gastrodia elata31.120
SRR5643664five period of Gastrodia elata25.390
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.750
SRR6049655Rhizomagastrodiae_C368-T10_good_17.680
SRR6049656Rhizomagastrodiae_C368-T07_good_119.770
SRR6049657Rhizomagastrodiae_C368-T07_good_112.240
SRR6049658Rhizomagastrodiae_C368-T04_good_19.610
SRR6049659Rhizomagastrodiae_C368-T04_good_111.460
SRR6049660Rhizomagastrodiae_C368-T01_good_111.400
SRR6049661Rhizomagastrodiae_C368-T04_good_19.280
SRR6049662Rhizomagastrodiae_C368-T01_good_122.340
SRR6049663Rhizomagastrodiae_C368-T01_good_118.900
SRR6049664Rhizomagastrodiae_C368-T10_good_122.370
SRR6049665Rhizomagastrodiae_C368-T10_good_122.370
SRP279888GastroGastrodia elata tuber 53.20
JuvenJuvenile tuber21.95
Mother_GastroMother tuber of Gastrodia elata 14.38
Mother_JuvenMother tuber of Juvenile 17.14