Gene detail

Detail information of GWHGAAEX011647/evm.TU.scaffold_39.30

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|325106589\|ref\|YP_004267657.1\|	D-xylose isomerase [Planctomyces brasiliensis DSM 5305]
nr	gi\|743845995\|ref\|XP_010938719.1\|	PREDICTED: xylose isomerase [Elaeis guineensis]
Swissprot	tr\|Q40082\|XYLA_HORVU	Xylose isomerase
trEMBL	tr\|K3ZSV4\|K3ZSV4_SETIT	Xylose isomerase {ECO:0000256\|RuleBase:RU000609}

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000035	2008468	2056149	+

Transcript Sequence
>GWHTAAEX011647 GTGCGATTTCGTCTAACACATTGAACTCTGTGGGAAGAGGACTTTGTGTTTCCCGTCTCAGTTGTATTTGACAAGGCTAAGTAGTTGAGACAATTCATTCATTTCAGTCCTTCACCGCTCCTTGCCGAGCCCGACTCCCTCTGGGTTGACATGAACACAGAAATAAGACTTAAACGGCTTTTTCCGGTCTTGCCGTGCTTGATTCTTTTCATATCGGCTCTTATTGCAGCATCACAAACATGTCCAGCTGATATCAATGCTAATTGTGGCCATGGTTCTTTGGATGAATGGGAAGGAGACTTCTTTCCTGGAATTTCCAAGATTAAATATGAGGGTCCTAATAGCAAAAACCCACTTTCATACAGGTGGTATAATGCTGATGAGAACATTCTTGGAAAGAAAATGAAGGATTGGCTGAGATTTAGTGTTGCTTTTTGGCATACATTTCGTGGAACAGGAGCGGATCCTTTTGGCGCTCCTACAAAGATGTGGCCCTGGGAAGATGGCACAAATTCAGTAGCAATGGCCAAAAAAAGAATGAGAGCAAACTTTGAACTCATTAGTAAGTTAGGTGTAGAAAGATGGTGCTTTCATGACAGAGATATTGCACCTGATGGGATGACACTCACAGAAACTAATGCAAATTTGGATGAGGTAACTGCTCTTGCCAAACAACTCCAAGAGGGAACAAATATCCGGCCATTGTGGGGTACAGCTCAACTTTTCATGCACCCTCGTTACCTTCATGGTGCTGCTACTAGTTCTGAGGTTCGAGTTTATGCTTATGCTGCTGCTCAAGTCAAGAAAGCCATGGAGGTTACCCACTATCTTGAAGGAGAAAATTTTGTATTTTGGGGTGGTCGAGAAGGGTACCAAACTCTCTTGAATACTGATATGAAAAGAGAACTTGACCACTTGGCGAAGTTTCTTCAAGCAGCTGTTGACTGGAAGCAGAAGATTGGTTTTAATGGTACTTTACTGATAGAACCAAAGCCTCAAGAACCTACTAAGCACCAGTATGACTGGGATGCTGCGACCACCTATGCTTTTCTGCAGAAGTATGGTCTTGAAGGAGAATTTAAATTAAACGTTGAATGTAATCATGCTACTCTGGCCGGTCATAGCTGCCATCATGAACTTGAAACTGCAAGAATAAATGGGTTACTCGGCAACATTGATGCAAACACAGGCGATCCTCAGATTGGCTGGGATACTGATCAGTTTCTCGTAGACATTGGAGAGGCTACTTTGGTCATGCTAAGCGTTATTAGAAATGGAGGATTGGCACCTGGAGGTTTCAACTTTGATGCAAAATTGCGGAGAGAGAGCACTGATGTTGAAGATATTTTCATAGCTCACATTTCTGGTATGGACACTTTGGCTCGTGGACTCCGAAATGCTGCTAAGCTTATTGAGGATGGATCACTAGATAAGCTTGTGAGGAAACGATATCAGAGCTTTGACTCGGACATTGGTGCTCTTATTGAGGCTGGGAAGGCTGACTTTGAGACACTGGAGAAGGCTGCCATGGAATGGGGAGAACCTTTTGTTCCTTCTGGGAAGCAGGAACTTGCAGAGATTATTTTCCAGTCTGCGTTATAGAGCGGCAGAAAACGAACTTATGAGTTTGAGGTTCAAAGACTGCTGTTATTCAGTAGTCAATCGCCTTTTTCTTGAAATAGAGCGTACTGTTGTTTGAACTTTTTTCTGGAAGAAGTTAATAAGCCTCAATGAGGATGGTTGGTTGAATTTGTATGCTTGATTCATCAAAAATTTATGTTTAAAAGCCTCAACCACTGAACTATAATATTATTCATAATAAGAACCCCGACCTATTTTTACGGTCAAATTGAAATGAATTGAACTGAGTATGCTATAAGCC

Network for GWHGAAEX011647

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01805	xylA	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Fructose and mannose metabolism	map00051

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0009045	Molecular Function	xylose isomerase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	47.820
SRP064423	SRR2545915	Juvenile tuber	54.620
SRP108465	SRR5643513	five period of Gastrodia elata	48.640
	SRR5643514	five period of Gastrodia elata	76.570
	SRR5643515	five period of Gastrodia elata	57.510
	SRR5643524	five period of Gastrodia elata	72.860
	SRR5643525	five period of Gastrodia elata	61.140
	SRR5643528	five period of Gastrodia elata	61.790
	SRR5643658	five period of Gastrodia elata	58.330
	SRR5643659	five period of Gastrodia elata	38.340
	SRR5643660	five period of Gastrodia elata	38.740
	SRR5643661	five period of Gastrodia elata	39.280
	SRR5643662	five period of Gastrodia elata	38.330
	SRR5643663	five period of Gastrodia elata	39.090
	SRR5643664	five period of Gastrodia elata	39.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	58.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	70.910
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	57.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	42.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	43.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	66.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	60.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	76.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	76.760
SRP279888	Gastro	Gastrodia elata tuber	24.28
	Juven	Juvenile tuber	35.85
	Mother_Gastro	Mother tuber of Gastrodia elata	51.93
	Mother_Juven	Mother tuber of Juvenile	33.73