Detail information of GWHGAAEX011651/evm.TU.scaffold_39.35
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383762159|ref|YP_005441141.1| | 1.00E-115 | GTPase Obg [Caldilinea aerophila DSM 14535 = NBRC 104270] |
| KOG | KOG1489 | 0 | Predicted GTP-binding protein (ODN superfamily) |
| nr | gi|672202732|ref|XP_008778459.1| | 0 | PREDICTED: GTP-binding protein OBGC, chloroplastic isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q0D3S3|OBGC1_ORYSJ | 0 | Probable GTP-binding protein OBGC1, chloroplastic (Precursor) |
| trEMBL | tr|M0U173|M0U173_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P17660_001} |
| TAIR | AT5G18570 | 0 | GTP1/OBG family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000035 | 2276162 | 2303403 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011651
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01018.21 | GTP1_OBG | 157 | 314 | 1.00E-51 |
| PF01926.22 | MMR_HSR1 | 317 | 437 | 6.20E-24 |
| PF09269.10 | DUF1967 | 520 | 589 | 1.60E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000287 | Molecular Function | magnesium ion binding |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0005525 | Molecular Function | GTP binding |
| GO:0003924 | Molecular Function | GTPase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.370 |
| SRR2545915 | Juvenile tuber | 22.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.060 |
| SRR5643514 | five period of Gastrodia elata | 21.180 | |
| SRR5643515 | five period of Gastrodia elata | 18.080 | |
| SRR5643524 | five period of Gastrodia elata | 19.760 | |
| SRR5643525 | five period of Gastrodia elata | 13.860 | |
| SRR5643528 | five period of Gastrodia elata | 13.260 | |
| SRR5643658 | five period of Gastrodia elata | 14.090 | |
| SRR5643659 | five period of Gastrodia elata | 21.220 | |
| SRR5643660 | five period of Gastrodia elata | 19.080 | |
| SRR5643661 | five period of Gastrodia elata | 18.730 | |
| SRR5643662 | five period of Gastrodia elata | 21.710 | |
| SRR5643663 | five period of Gastrodia elata | 21.140 | |
| SRR5643664 | five period of Gastrodia elata | 20.400 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.780 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.360 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.740 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.94 |
| Juven | Juvenile tuber | 30.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.04 | |
| Mother_Juven | Mother tuber of Juvenile | 20.35 |