Detail information of GWHGAAEX011653/evm.TU.scaffold_39.38
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|312137080|ref|YP_004004417.1| | 8.00E-30 | 50S ribosomal protein L22 [Methanothermus fervidus DSM 2088] |
| KOG | KOG3353 | 7.00E-109 | 60S ribosomal protein L22 |
| nr | gi|743806605|ref|XP_010927719.1| | 7.74E-120 | PREDICTED: 60S ribosomal protein L17 [Elaeis guineensis] |
| Swissprot | tr|O48557|RL17_MAIZE | 2.00E-113 | 60S ribosomal protein L17 |
| trEMBL | tr|B3TM07|B3TM07_ELAGV | 3.00E-120 | Ribosomal protein L17 {ECO:0000313|EMBL:ACF06588.1} |
| TAIR | AT1G67430 | 7.00E-109 | Ribosomal protein L22p/L17e family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000035 | 2406155 | 2414112 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011653
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00237.18 | Ribosomal_L22 | 17 | 151 | 2.80E-40 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02880 | RP-L17e, RPL17 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
| GO:0015934 | Cellular Component | large ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 36.960 |
| SRR2545915 | Juvenile tuber | 51.930 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 79.500 |
| SRR5643514 | five period of Gastrodia elata | 86.790 | |
| SRR5643515 | five period of Gastrodia elata | 68.980 | |
| SRR5643524 | five period of Gastrodia elata | 76.530 | |
| SRR5643525 | five period of Gastrodia elata | 35.670 | |
| SRR5643528 | five period of Gastrodia elata | 49.230 | |
| SRR5643658 | five period of Gastrodia elata | 30.110 | |
| SRR5643659 | five period of Gastrodia elata | 79.220 | |
| SRR5643660 | five period of Gastrodia elata | 86.610 | |
| SRR5643661 | five period of Gastrodia elata | 84.770 | |
| SRR5643662 | five period of Gastrodia elata | 71.170 | |
| SRR5643663 | five period of Gastrodia elata | 65.180 | |
| SRR5643664 | five period of Gastrodia elata | 59.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 99.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 157.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 125.300 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 81.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 86.780 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 60.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 96.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 102.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 176.350 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 144.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 162.750 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 162.750 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 73.84 |
| Juven | Juvenile tuber | 39.07 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 44.32 | |
| Mother_Juven | Mother tuber of Juvenile | 41.45 |