Gene detail

Detail information of GWHGAAEX011654/evm.TU.scaffold_39.39

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743802043\|ref\|XP_010926505.1\|	0	PREDICTED: leucine-rich repeat extensin-like protein 5 [Elaeis guineensis]
trEMBL	tr\|M0RRX0\|M0RRX0_MUSAM	1.00E-158	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P13400_001}
TAIR	AT3G18230	6.00E-58	Octicosapeptide/Phox/Bem1p family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000035	2466619	2469227	+

Transcript Sequence
>GWHTAAEX011654 AAAAAAAAAATATAAAAAAACTTATGCCTGAAATTGGATCGAATCGCCGAGATATACAACGAAGGAGCGAGAGGCGAACAATCATGGAGATGATGAACTCCGCCGCCGTTGGCGGAGGCTGCGTGGTGATGGGTTACGCGGATTCTGTAGACTCGTCTCCAAGGTCTCGTGGAGGCGAATCTTGGGACGAGCCGTTTCCTTCGTCAGCTGCAGTCGCGGCCTCAAAACTCCGATTGATGTGCAGCTATGGAGGACGGATCGTTCCTCGGCCGACCGATAGATCTCTGTGCTACCTTGGCGGAGAGACTAGGATCGTTGTTGTGGAGCGGCAAGCCACCCTCGCAGATCTTTCCGCCAAACTCTCCCGAAACCTCCTTGGCGGATGTAATTTCACCCTCAAATACAAGCTTCCTAACGAGGACCTCGATTCTCTCATCTCCGTGACCACCGACGAGGATCTGGACAATATGATCGACGAGTACGATCGCATCGTTGCATCCTCGTCCGCCAGCAGTGGATCTAGCTCCTCCCGCTCTTCCCGCCTTCGACTGTTCCTCTTCGCCACCAAGCCAGAGTCCGCGCCGTCGTCGATTGGGTCGCTCCTTGATGATTCAAAGTCGGAGAATTGGTTTGTGGATGCTCTAAATGGCGCCATCGGCATGGATGGCCTCCCCCGCGGCCTTTCTGGCGACTCCGCCTCTGTAAACTGCCTTCTTGGCCTTGAGGATGACTCCTCCGTAAAATCTCGCTCCGAGGCCGTAGCTCCCCAACCAGAGCACGAGCAGTTACTTCTTCCTCGGCCAGACTCTTCTGGCAAGCTCACACGCCAAGATGTGCACTCCATGCCGGATTCTCCCATGGTAGACTCTGCTTCCTCCTTCGGATCGACGTCCTCCGCCCCTTATCTCTCGAATCTGCCCCCGATTCGTGTGCGCCCAGATGATCGGCATATGGAACAGCGAATGGGTGTCTTGGAAGACCATTTTACACAGATAAACATTTCTTCTGCAGCTGCAGCTCCTCCAAGCCAGAGGTTGTCAGACGAGGGTGGCTTGAAAGATCCCCACATCCCTTTCCACCACTTCCCTCCTGTTGCAAACCCAATATCCACTTCATCAATCTACCCTTCTGAGAATCCTAGCCGCAAAACCTTCTCGTCCGATGAGGAGAAACCAGACCAAGTTGCTGCCATCGGCAAACCAATGCCGTCGCACTCGCAGCATCCGCCACTGCCTCTTCAGCAGAAGTATAATCCTTTGGATTCGGTCCCTCAGGATCCCATCGCCAGGCCCGTATATTACCCTGAAAGGGTTTCTCCCAATATCTCCACTGTGAACCCCATTCCCGATCTCAAACGCGATGTTCCTGTCTCCAGCTACATTGTCTCATCCATTTCTCCTGGTGAGCAGCAGCAATTCCGCCCTCCTTCATCTCAAATGCAACAGTTTCAGCAACAGCAGCAGCAACCACAATTTTTTCAAGCAAATTCTAACCCCCATTATGTCCACCATCCCGCAACCGGCACTGTCCTCCCATTCTCAGCTTTCTACCAAATGCCCATCCAACAATCCCAACAGTCCCCTTTATTTGATCATCAATATCCTGTTTATTACCTCCCGGTCCGTCAGAACCTCGCTCCCCCGCCTCCTTTTAATATGCCCATCGCCACCCCTTCGCTTGCAGACTCCACTCATGGAAACTCCACAGCTACTACCTTCTCAAAATCCATCCCTGCCAAACCAGAACTGCCTCCAAATCTATACAGAATGGCACCACCACAGCAGACTAGTGCCACACCACTGCCAACAACCATGTCTCAGCCTCAACAGATGCAACCGCTCATCCAACTCACTTCTGATCAGAGCCTCACTTATTCAGGAATGGGCTATCATGTGTTGCACCCCCATCACCCGTCTCATCATCCGCCCACCACTGGTATCCCTGTAGGAACCAATTACGGTTACGAGTTTGCCACCGATCCTGCTGGGAACCCTCCAGTTTACTTCACTCAGACAGCCTCTCCCCCAGGAATGGCGCCATCACAGTACCAAACTGTGGTGACGTCCCCTGATGCTGGTGCCGTTGCTGCTGCCACCGCGCTCCAGTCTGCCGGCATTAATGAGGTTAAGCAGGCAAGAGCTTCATGATGTAAGTAACAGGATAGTGTGTTTGAATAACACAGACTCTTAGCTAGATTTTTGGATATTACTGGATTGCGTTTGCCTTATATTATGCTGTGTGCTGATATTATTGCGATGTTTGGTTAGTTGTAATTGGAATAATGAGGTATTTGATGCCCTTTGTGCCCTCCGTGTTTAGCTGATTTGTGCACTTCTGAAGCATAAACTTTTGTTATCAGTTTATTGTTTTCTATAAATAAACGTATTAGATAGGCTATGAAAGCTTGCGTAAATTTTATCAAAACTGTTCTCAAATTGTAGAACCATGTTGCGTAAGCTGGATTTTTTTTTTGTATGACAAGCAATGATTTTACTAGCTAACGTTTTCC

Network for GWHGAAEX011654

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00564.23	PB1	87	180	2.50E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	121.820
SRP064423	SRR2545915	Juvenile tuber	172.760
SRP108465	SRR5643513	five period of Gastrodia elata	126.670
	SRR5643514	five period of Gastrodia elata	74.600
	SRR5643515	five period of Gastrodia elata	100.570
	SRR5643524	five period of Gastrodia elata	79.740
	SRR5643525	five period of Gastrodia elata	78.790
	SRR5643528	five period of Gastrodia elata	61.850
	SRR5643658	five period of Gastrodia elata	74.780
	SRR5643659	five period of Gastrodia elata	229.120
	SRR5643660	five period of Gastrodia elata	294.180
	SRR5643661	five period of Gastrodia elata	252.620
	SRR5643662	five period of Gastrodia elata	200.520
	SRR5643663	five period of Gastrodia elata	232.780
	SRR5643664	five period of Gastrodia elata	233.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	166.310
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	218.220
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	120.440
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	205.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	161.800
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	203.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	155.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	158.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	86.510
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	94.500
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	91.350
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	91.350
SRP279888	Gastro	Gastrodia elata tuber	186.02
	Juven	Juvenile tuber	271.25
	Mother_Gastro	Mother tuber of Gastrodia elata	84.53
	Mother_Juven	Mother tuber of Juvenile	178.29