Gene detail

Detail information of GWHGAAEX011656/evm.TU.scaffold_39.42

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|15669075\|ref\|NP_247880.1\|	1.00E-25	DNA polymerase B1 [Methanocaldococcus jannaschii DSM 2661]
KOG	KOG1798	0	DNA polymerase epsilon, catalytic subunit A
nr	gi\|743881641\|ref\|XP_010908949.1\|	0	PREDICTED: DNA polymerase epsilon catalytic subunit A-like [Elaeis guineensis]
Swissprot	tr\|F4HW04\|DPOE1_ARATH	0	DNA polymerase epsilon catalytic subunit A
trEMBL	tr\|V4SFA7\|V4SFA7_9ROSI	0	DNA polymerase {ECO:0000256\|RuleBase:RU000442}
TAIR	AT2G27120	0	DNA polymerase epsilon catalytic subunit

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000035	2532968	2606502	-

Transcript Sequence
>GWHTAAEX011656 TCCTCCCCCTCGGGGGTTTTTCTTTCTTGGTTGAATTATGTGATTTCTCTTCGTCGCAGGGTTTAGGGTTTATGTAAAACTCTACGATTCCAGGCTTCACTACTTTTTCCCCAAAATTTAAGGTTTTTTTTTTTTCCTGCGATTTTGGCTTACGCAATTCGCCAAGTCCTCGCGGACGCCCTGCAAAATTTAAGCTCCTTCTCTCGTGTCTCCTGCGACATCTGCCTTCGCATCTCCCGCGAGATCTTCTCTCCTTCATCGGCTTTCTATTTAAATCAATTATGAACAGAGGAGGGAGGCGGCGGGCAAACTATAACTCTGGAAGAAATCCATCAAAGCTAAATCTACGTATTTCTGCGGAAGAGATCATTGAAAGAAAGCTAGGATTTGACTTATTCATCGAAGGGGATAAGAGGCTTGGATGGCTTCTAACACTCGCCCCATCTACCTATGAGGATAACGATACATTTAAGATACATAGTTGTGTGGACCTATACTTTGTATGCCAGGATGGATTCACCTTTAAGGCAAAATATATTTTCAAACCTTATTTCTATGTTGGAACCAAGGAAAAAATGCAATTGGAGGTGGATGCTTACCTCCGTCGGCGCTATGAAGGCGAACTTGCTAATATTGAAATTGTGTACAAAGAAGATTTAGATCTGAAAAATCATCTCTCAGGATTGTGTAGACCATACCTAAAGGTAAGCTTTGATACGGTTCAACAGTTGACACATGCTAGGAATGATCTCTTGCACGTGGTTGAAAGGAACCAAGCAAAACTGGGTACCGTTGAAGCCTATGAATCCATATATGGCGTTAAAGGAACAGAGAGGTTACAAGATTTTGCTGATTGTATAACAGACCTTCGTGAATATGATGTCCCTTACCATGTGCGCTTCTCAATCGACAATGATGTTCGATGTGGGCAGTGGTATGATGTAAGTGTATCCAGCAGGGGTTTAATAGTAGAGAAAAGAACTGATCTTCTTCAACGTGCTGAAGTTCGCGTATGTGCATTTGATATTGAAACTACAAAACTTCCACTGAAATTTCCAGATGCAGAATATGATCAAATAATGATGGTGTCATATATGGTAGATGGGAAAGGTCATTTAATTATTAATAGAGAGGTTGTTGGAGCAGATATTGATGATTTGGAATATACACCTAAACCAGAATTTGAAGGCTGTTTTAGTGTGAAAAATGTGGAGAATGAGGCAGAGCTTCTGAAACGCTGGTTTGCACACATGCAAGAAATTAAACCTGGTATTTATGTCACCTACAATGGCGATTTTTTTGATTGGCCTTTCTTGGAAAAACGAGCTGCTCATTACGGGATTAAAATGAGTGAGGAAATCGGATTCAAGATTGATAATAATCAAGGGGAATGCCGTGCTAAATTTTCATGCCATTTGGATTGCTTTGCTTGGGTCAAGCGTGACAGTTATCTGCCTCAGGGAAGCCAGGGTTTAAAGGCTGTCACAAAAGCCAAATTAGGTTATGATCCATTGGAGGTGAACCCTGAAGATATGGTTCGTTTTGCAAGGGATAGACCTCAGACAATGGCTTCTTACTCTGTATCTGATGCTGTGGCAACTTACTACCTTTACATGACTTATGTTCACCCATTCATTTTCTCACTTGCCACTATAATTCCCATGCCTCCGGATGAAGTTCTACGAAAGGGAAGTGGAACTTTATGTGAAATGCTTCTTATGGTGCAGGCATACAAGGCCAATGTGATCTGTCCCAACAAGCATCAAGAAGATCATGAGAAATTCTACAACAACAGGCTGTTAGAAAGTGAAACATATATTGGAGGTCATGTTGAATGTCTTGAATGTGGCGTTTTTAGAGCAGATATTCCTACCAATTTTCAACTTGATTCAGCTTCTTACGAGCTACTAATCAGTAATCTTGACCGTGATCTGAAGTTTGCAATCAAAGTTGAGGGAAAAGTTGAGATTGATGCTATTGCAAACTATGGTGATGTGAAAATGGCTATAATCGAGAAGCTGGCGTTGCTGCGAGATCATCCTACAAGGGATGAGAAACCGTTGATCTATCATTTGGATGTTGCTGCAATGTATCCAAATATCATTTTGACAAACAGACTTCAGCCACCATCAACTGTTTCGGATGTGGTTTGCACCGCATGTGATTTTAATCGTCCAGGAAAAAACTGTCTCCGAAAGCTTGAATGGGTTTGGCGTGGGGAAACCTACACAGCGAAGAAAAGTGATTATTATCATATGAAGAAGCAAATAGAGTCAGAACTTGTTGAATCAGATGGTGGCCAATCTACAAAGCCTTTTACTGAACTCCCAAAGGCTGAACAAATTCTGAAACTGAAAGAACGATTAAAGAAGTACTGCCAGAAGGCTTATAAACGGGTTCTTAACAAACCTTCTATGGAAGTTCGTGAAGCTGGCATTTGCATGCGTGAAAATCCTTTCTATGTAGATACTGTGCGAAGTTTTCGAGATAGAAGATATGAATATAAGGGTTTAAACAAAGAATGGAAGGAAAAATTGGCAAATGCAAAAGCTAGTAAAAATTCAATGAAGATCCAGCAAGCACAAGACATGGTTGTTCTATATGATTCATTGCAGCTTGCTCACAAGTGCATACTAAACTCATTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTATTCAATGGAAATGGCTGGTGTTGTCACTTACACTGGGGCAAAGATCATTCAGAATGCTCGTTTGCTTGTTGAAAAGATTGGAAGACCTCTTGAATTGGATACTGATGGTATTTGGTGTGCTCTTCCAGGGTCTTTCCCAGAAAATTTCACCTTTAAAACAAAAGATGGGATGAGAAAGTTCACAATCTCATACCCTTGTGTGATGCTTAATGCTGATGTTGCAAGAAACAACACCAATGATCAATATCAGACTTTAACAGACCCTATAACCAAGGCATATGCTACACACAGTGAATGCTCGATTGAGTTCGAAGTGGATGGGCCTTACAGAGCAATGATCATTCCCGCTTCAAAGGAAGAAGGAATTTTAATTAAGAAGAGATATGCAGTTTTCAATCATGATAAAAGCTTGGCAGAACTAAAAGGTTTTGAAATCAAGCGAAGAGGTGAGCTGAAGCTCATAAAAGTTTTCCAGGCAGAAGTTTTTGACCAGTTCCTGGAAGGTTCTACGTTAAAGGAATGCTATGCTGCTGTTGCAGCTGTGGCTAATCGATGGTTAGACCTTTTAGATAACCAAGGGGAAGGTATTGCTGACAGCGAGTTGCTTGATTATATTTCAGAATCAAGCACCATGAGCAAATCTTTAGCTGATTATGGGGAACAAAAGTCATGTGCTGTGACTACTGCAAGACGCCTTGCTGATTTTCTTGGTGAAACAATGGTTAAAGATAAGGGTCTCCATTGTCAATATATTGTTGCTTGTGAGCTGAAGGGTACTCCAGTTAGTGAGCGTGCTATTCCTGTTGCAATATTTGAAACAGAGGATGAAATCCAAAAGTATTATCTGCGCAAATGGTGCAAAGTTTCACCTGGTATGGGCATTAGATCAATTGTTGATTGGTCCTATTATAAGTTGCGTCTTTCTTCAGCCATTCAAAAGATTATTACCATTCCTGCCGCAATGCAGAAAGTTGACAATCCTGTTCCCAGAGTGTTGCATCCTGAATGGCTACACAAAAAAGTTCGTGAAAAGGAGGATCGGTTTCACCAGCGTAAACTAGATGATATTTTCAGCACAAAAAGAAAAATTGCGGGTGATGCACAAATAAGAGACTTAGAGGACACTGTAAGCAATGGAAACAATTTTAGAAGTGGACCTCAGCCTTTGATTTCTGACACCGAGCGTAACAAAAAATGTCGCTCAATGAAACTATCTATTCAAGTAAATGATTTGAACAAGTCTCCAGAGCCTTTTGTAGTTTTGGATAATGTAGGTTATTTGGGTGAAACCTTTGATAGAAATGTTGATTATCATGGTTGGCTTTTGGCTAAAAAAAGGAAATGGAAAATAATTCTTGAAAAAAGAAAGAAGAGAAGAATAGATTTCATGAATGAATTAAATCAGTCATCTGCAACTACCAAATTTCCTGTATCTACTACTGTAAACTACAATCGTACTGGAGGAAAGAATGGATTGAGTTCATTTTTTAGAAAACACGAGTTAGCACTTTTCAAATCGCACTGGCAGATTATACAGCTTGTCTCAAGTACAAAACCGGGACACTTCATGGCCTGGATAGTCGTGGATAATGTTATGCTAAAGGTTAACCTTGATGTTCCTAGAATTTTCTATCTCAATTCTAAAGCACCTATAACTGAAGAATTCCCTGGACGATGTGTGAATAAAATTCTTCCTCATAGTAGACCATCGTTCAATCTTATTGAGGTTGTAATTGATGAAGAACAATTTCGAGCTGAAAGTAGAAAACTTGCTAGTCACTTGGCAGATCCAGAAGTTGAGGGAATATATGAGGGGAAGGTTCCTTTAAAATTTAATGCTGTCCTCCAGATTGGCTGTGTTTGTAAAGTAGACAAACTTGCTAAAGCTCGTAATACACAGGATAGCTGGAATCTAACAGAGTTGCACATGAAGACTACGACTGAATGTTCTTATTTGGACCGGATTATTTCTTTCTTTTATCTGTATCATAGTTTCTCTGATGGAAGGGCGATATTTGTGGTATATTTTCAATCAACTGGCATAATATCTGTAGTGGTCGTGAGCCCCTTTCAAAATAGAGAAATTTCCTCGTCACTTCTTGATAGACAATTTCGAGAAATTTGCCAGACAATTCCTGCAGAATCTCTCTTTCAGCCATCTTATGCATCTGCAAAGGTGGAGTATGTGCGCACAATGGAAGCTGGAGAAAAGCTTGTGCAAAGAGCATTAGTTGAATACAGGCTTCAACATCCTGGGCCTACCGTTGCTATCATAGAATGCCCACATGTGCCCATTATAAAATCAGCAGTGCGTGTTCTAGATGATTTTCCTTGCATCAGTATTCCTTGCAACACCCAAGACAGCAACTATCAGGCTCTTGGGTGGCAAGTAACGGCTGGGAAAATTGGAATGCAACGGTGTGCTGCATCTTTGAGGTGGTTTTCCGAAAGGATTCTGCTATCCAGATATGCACATGTGCCAATAGGAAATTTTGAAATCGATTGGCTCTTGTTTACTGCCGATGTCTTCTTTTCTAGAGCATTGCGCGATCAGCAGCAGGTTCTTTGGACATCTGATGACGGCATTCCTGATTTGGGAGGCATGTGCGAAGAAGGCGATATATGCTTTGCTGACGAAGTAAATCAGCCGGCACTCACTTATCCTGGAGCTTATAGAAGGGTAGCTGTTGAACTAAAGATTCATCACCTAGCCGTAAACTCCCTGCTTAAAAGTAATCTGATTGATGAAATGGAAGGGGGATCATTGTTTGGGTATGAACAAGAAATAAATTTGGCGCCGTCTACCCATGAAGTTAATGACGAAACCATCTCTTGCGCACCCGCTTTTCGGGTGCTTAAACAGTTAATTCATAGATGCATTTCTGATGCTGTATCCTCTGGTAATGAATATGCTGATGCAATATTGCAGCATCTTTACCGGTGGCTTTGCAGCCCCATGTCAAAGCTTCATGACCCTGCCCTTCATCGAGTTCTACATAAGATTATGAAGAAAGTATTTGCTCTGCTTTTGGCTGAGCTTCAAAAGCTGGGAGCGAGCATCATCTTTGCTGATTTCTCCAAGGTTGTTATAGACACAGGAAAGTTGGATATGCTGGCAGCACGTGCTTATTGTGATTGTTTGATAAAAACTCTGCAAACAAGGGATCTTTTTGAGTGGATTGAGCTTGAACCGCTCAACTTCTGGCATTCTTTATTATTTATGGATCAGCACAACTTTGGGGGAATCCAGGCGCAATCCCCCACCACTGATTCTATAGCAGAAAATGCGGAGTGTGACACTCATGAAATAGACATTATTTCTAGCTGGAGCATTGCAGATTATCTACCAAAAGTGACTCAGGACCATTTTGTTCTGATAGTGTCCGAGTTCTTATATCTCCCCTGGAAATATTCAAAAGCTCAACTCGCCAGCTTCAACAGCAGGAGAGATGCAGCCTCCTCCACTCAATCCATCACCATTTCATCTGCCGAAACCCTAGAATCACGTGTCAGCGAATATCTGAAAGACCAGATTAGCAGCCATTTTTCGGAAAAACTCCTGAAGATTGTGTGCGACACCCTCCACCACTTCAAGGGAAAGAGCAATGCTGATGCTGATGATGCTTTGAAAAACCTCGAGGACGCTCACTCGAACGGAAAAGGAAATGCTGCGTTGGAGTTCATCAAGCACGTCTGCACCGTTCTTGCTCTGGATCAGAACGTGCAGCACGATATTCTGAGGCTGAGGAAGAACCTTCTGAAGCTGGTGCGGGTGAAGGAGTTCGCTCCGGAAGCGCAGTTCCAGGACCCGTGCCCCTCCTTCGTTCTGCCCAACGTCATCTGCAGCTACTGCAATGACTGCCGGGATCTGGAGCTGTGCCGGGAGCAGGAGTGGAGGTGTGCGGCAGCGCAGTGCGGACAGGCTTACGGAAGGGAGGAGATGGAGAACTCGCTCCTGCAGATAGTGCGGCAGAGGGAGAGGTTGTACCATCTGCAGGATCTGGCTTGCCTCAGGTGCCGGCAGATCAAGGCCGCGCACTTGACCGAGCAGTGCGCGTGCGGAGGGACCTTCCGTTGCGTCGAGGGCCCGCCTGAATTCCTCAGAAAGATGAACCTCATTCGCAGAATCGCCGTCCGCCACCGCCTGCGGTTGCTCCATGACTGCACTTCTTCGATACTGTCAGATGCCGCCGCCGCCGTCTTCTAGCTGCCCCGCGCTCCTTATATATCTAATTGTTGTGCAAAATTATAATAATTAAATTTATGAATAAAATTTAAGCAGTGCTCTAAAATTATTTGGTTTGGTGCCCAAAAAAAATTTATTTGTTCATTTTAACATAAATAGAAAGATGATCATATACTTGTTTGTTTATGAGTGTTGGAAGAATGATCATTTAAGGCTAATTAAGATAAGTTTAGTAAAATCTTAAGAAACACTTGCTAGAGGCTATGTAG

Network for GWHGAAEX011656

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03104.18	DNA_pol_B_exo1	76	401	3.70E-78
PF00136.20	DNA_pol_B	750	1082	1.10E-17
PF08490.11	DUF1744	1519	1882	4.60E-112

Protein Sequence

>GWHPAAEX011656
MNRGGRRRANYNSGRNPSKLNLRISAEEIIERKLGFDLFIEGDKRLGWLLTLAPSTYEDNDTFKIHSCVDLYFVCQDGFTFKAKYIFKPYFYVGTKEKMQLEVDAYLRRRYEGELANIEIVYKEDLDLKNHLSGLCRPYLKVSFDTVQQLTHARNDLLHVVERNQAKLGTVEAYESIYGVKGTERLQDFADCITDLREYDVPYHVRFSIDNDVRCGQWYDVSVSSRGLIVEKRTDLLQRAEVRVCAFDIETTKLPLKFPDAEYDQIMMVSYMVDGKGHLIINREVVGADIDDLEYTPKPEFEGCFSVKNVENEAELLKRWFAHMQEIKPGIYVTYNGDFFDWPFLEKRAAHYGIKMSEEIGFKIDNNQGECRAKFSCHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFARDRPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQEDHEKFYNNRLLESETYIGGHVECLECGVFRADIPTNFQLDSASYELLISNLDRDLKFAIKVEGKVEIDAIANYGDVKMAIIEKLALLRDHPTRDEKPLIYHLDVAAMYPNIILTNRLQPPSTVSDVVCTACDFNRPGKNCLRKLEWVWRGETYTAKKSDYYHMKKQIESELVESDGGQSTKPFTELPKAEQILKLKERLKKYCQKAYKRVLNKPSMEVREAGICMRENPFYVDTVRSFRDRRYEYKGLNKEWKEKLANAKASKNSMKIQQAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGRPLELDTDGIWCALPGSFPENFTFKTKDGMRKFTISYPCVMLNADVARNNTNDQYQTLTDPITKAYATHSECSIEFEVDGPYRAMIIPASKEEGILIKKRYAVFNHDKSLAELKGFEIKRRGELKLIKVFQAEVFDQFLEGSTLKECYAAVAAVANRWLDLLDNQGEGIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGETMVKDKGLHCQYIVACELKGTPVSERAIPVAIFETEDEIQKYYLRKWCKVSPGMGIRSIVDWSYYKLRLSSAIQKIITIPAAMQKVDNPVPRVLHPEWLHKKVREKEDRFHQRKLDDIFSTKRKIAGDAQIRDLEDTVSNGNNFRSGPQPLISDTERNKKCRSMKLSIQVNDLNKSPEPFVVLDNVGYLGETFDRNVDYHGWLLAKKRKWKIILEKRKKRRIDFMNELNQSSATTKFPVSTTVNYNRTGGKNGLSSFFRKHELALFKSHWQIIQLVSSTKPGHFMAWIVVDNVMLKVNLDVPRIFYLNSKAPITEEFPGRCVNKILPHSRPSFNLIEVVIDEEQFRAESRKLASHLADPEVEGIYEGKVPLKFNAVLQIGCVCKVDKLAKARNTQDSWNLTELHMKTTTECSYLDRIISFFYLYHSFSDGRAIFVVYFQSTGIISVVVVSPFQNREISSSLLDRQFREICQTIPAESLFQPSYASAKVEYVRTMEAGEKLVQRALVEYRLQHPGPTVAIIECPHVPIIKSAVRVLDDFPCISIPCNTQDSNYQALGWQVTAGKIGMQRCAASLRWFSERILLSRYAHVPIGNFEIDWLLFTADVFFSRALRDQQQVLWTSDDGIPDLGGMCEEGDICFADEVNQPALTYPGAYRRVAVELKIHHLAVNSLLKSNLIDEMEGGSLFGYEQEINLAPSTHEVNDETISCAPAFRVLKQLIHRCISDAVSSGNEYADAILQHLYRWLCSPMSKLHDPALHRVLHKIMKKVFALLLAELQKLGASIIFADFSKVVIDTGKLDMLAARAYCDCLIKTLQTRDLFEWIELEPLNFWHSLLFMDQHNFGGIQAQSPTTDSIAENAECDTHEIDIISSWSIADYLPKVTQDHFVLIVSEFLYLPWKYSKAQLASFNSRRDAASSTQSITISSAETLESRVSEYLKDQISSHFSEKLLKIVCDTLHHFKGKSNADADDALKNLEDAHSNGKGNAALEFIKHVCTVLALDQNVQHDILRLRKNLLKLVRVKEFAPEAQFQDPCPSFVLPNVICSYCNDCRDLELCREQEWRCAAAQCGQAYGREEMENSLLQIVRQRERLYHLQDLACLRCRQIKAAHLTEQCACGGTFRCVEGPPEFLRKMNLIRRIAVRHRLRLLHDCTSSILSDAAAAVF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02324	POLE	DNA replication	map03030
		Base excision repair	map03410
		Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name
GO:0006260	Biological Process	DNA replication
GO:0003676	Molecular Function	nucleic acid binding
GO:0000166	Molecular Function	nucleotide binding
GO:0008270	Molecular Function	zinc ion binding
GO:0003677	Molecular Function	DNA binding
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	49.020
SRP064423	SRR2545915	Juvenile tuber	37.000
SRP108465	SRR5643513	five period of Gastrodia elata	13.060
	SRR5643514	five period of Gastrodia elata	15.050
	SRR5643515	five period of Gastrodia elata	13.530
	SRR5643524	five period of Gastrodia elata	13.690
	SRR5643525	five period of Gastrodia elata	7.970
	SRR5643528	five period of Gastrodia elata	5.560
	SRR5643658	five period of Gastrodia elata	5.720
	SRR5643659	five period of Gastrodia elata	21.100
	SRR5643660	five period of Gastrodia elata	25.880
	SRR5643661	five period of Gastrodia elata	19.880
	SRR5643662	five period of Gastrodia elata	20.720
	SRR5643663	five period of Gastrodia elata	21.450
	SRR5643664	five period of Gastrodia elata	26.520
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.750
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.070
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.710
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.620
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.520
SRP279888	Gastro	Gastrodia elata tuber	29.58
	Juven	Juvenile tuber	30.85
	Mother_Gastro	Mother tuber of Gastrodia elata	13.94
	Mother_Juven	Mother tuber of Juvenile	19.33