Detail information of GWHGAAEX011658/evm.TU.scaffold_39.45
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|338174191|ref|YP_004651001.1| | 3.00E-73 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Parachlamydia acanthamoebae UV-7] |
| nr | gi|164604992|dbj|BAF98292.1| | 1.71E-134 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis] |
| Swissprot | tr|P69834|ISPD_ARATH | 7.00E-118 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic (Precursor) |
| trEMBL | tr|M0TK53|M0TK53_MUSAM | 6.00E-135 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P23670_001} |
| TAIR | AT2G02500 | 7.00E-64 | Nucleotide-diphospho-sugar transferases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000035 | 2735438 | 2778731 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011658
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01128.18 | IspD | 89 | 309 | 2.30E-54 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00991 | ispD | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of antibiotics | map01130 | ||
| Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008299 | Biological Process | isoprenoid biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0050518 | Molecular Function | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity |
| GO:0070567 | Molecular Function | cytidylyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.290 |
| SRR2545915 | Juvenile tuber | 15.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.270 |
| SRR5643514 | five period of Gastrodia elata | 4.720 | |
| SRR5643515 | five period of Gastrodia elata | 4.410 | |
| SRR5643524 | five period of Gastrodia elata | 4.930 | |
| SRR5643525 | five period of Gastrodia elata | 1.390 | |
| SRR5643528 | five period of Gastrodia elata | 0.900 | |
| SRR5643658 | five period of Gastrodia elata | 1.150 | |
| SRR5643659 | five period of Gastrodia elata | 5.370 | |
| SRR5643660 | five period of Gastrodia elata | 6.570 | |
| SRR5643661 | five period of Gastrodia elata | 6.000 | |
| SRR5643662 | five period of Gastrodia elata | 10.440 | |
| SRR5643663 | five period of Gastrodia elata | 9.280 | |
| SRR5643664 | five period of Gastrodia elata | 10.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.190 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.580 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.670 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.980 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.980 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.04 |
| Juven | Juvenile tuber | 7.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.24 | |
| Mother_Juven | Mother tuber of Juvenile | 3.78 |