Gene detail

Detail information of GWHGAAEX011660/evm.TU.scaffold_39.48

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|343085920\|ref\|YP_004775215.1\|	3.00E-27	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
nr	gi\|672191718\|ref\|XP_008775577.1\|	1.89E-153	PREDICTED: LOW QUALITY PROTEIN: pollen-specific leucine-rich repeat extensin-like protein 3 [Phoenix dactylifera]
Swissprot	tr\|O81765\|PLRX4_ARATH	1.00E-137	Pollen-specific leucine-rich repeat extensin-like protein 4 (Precursor)
trEMBL	tr\|A0A061DZJ6\|A0A061DZJ6_THECC	6.00E-148	Leucine-rich repeat family protein {ECO:0000313\|EMBL:EOX98154.1}
TAIR	AT4G33970	4.00E-137	Leucine-rich repeat (LRR) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000035	2836216	2837874	+

Transcript Sequence
>GWHTAAEX011660 ACCTACCAGCAATTTACGTGGCCGTCCATATCCTAGAATTACAGCTCAGCCACCCTCCTGCAACCCAGCCTTCTTCCTCTTCAATGGTCTCCTTTACCGTCATCCCCAAAAGCACCCGGATTATGCTCCCATTATGGAGACCTTCTTACCGGTTGTCGTGTTACTCATTCTCCCCTACCTTGCATTCAGCGTCTCAGACGCAGAAGCTGCTCTTATTGCTCGGCGCCAGCTGGAGCACTTCTCCAGCCCCAAAGGTGCCTTTCTTTCACCATCACTAGAATTCGACATCAAAATTGCGGTGAAGATCCGCAACCCGCAGCTTCGCAAAGCCTACACCGCTTTCCAAACCCTAAAGAATGCGATTCACTCGGATCCGAACAACTTCACTGGCAATTGGGCCGGCCCCTACATCTGCACATACAATGGCATCTTCTGCTCTCCATCCCCCTACGACCCTTCCCTCAACGTCGTCACCGCTGTAGATCTCAATGGCGCTGATATTGCCGGCTTCCTTCCCGTAGAACTCGGTCTCTTAGAGGATGCCGCGATCTTCCACGCAAACTCGAACCGCTTCTGCGGTGTAATCCCGGAGAGTTTTGCAAAGCTGAAGCGCATGTTCGAACTCGATCTTAGCAACAACCGGCTCGCCGGCACCTTCCCCAACGTGGTTCTCAAGATGCCTTCGCTCAAGTACCTTGACCTCAGGTACAATGATTTCGAGGGACAGCTACCGCAGGAGCTATTCAATAAGGATCTCGACGCCCTGTTTCTGAACAACAATCGATTCGACTCCAACCTACCCGAAAACTTTGGCAATTCGACAGTGTCGATTGCAGTGCTAGCCAACAATCACATAACTGGCTGCATTCCAAGAAGCATTGCAGGGATGGGAAACCTCAATGAGTTGATTTTAATGAACAATGAGATAAATGGCTGCTTGCCGGTTGAAGCGGGATTTTTGAGTAACATAACAGTTTTTGATATCGGGTTTAATTCATTATCAGGCTTTGTGCCCGAGAGCTTTGCTAGGCTGAAGAACGTGGAGGAATTGGATGTCTCTCATAATATGCTGACCGGTGTGGTTCCGAAGGGGGTTTGCGAATTGCCAAAGCTCTACAAGCTCACACTTTCGTTCAATTATTTCAAGGGAGAGCCTTCAATGTGTTTGATGCCGCGGACATCAGATAGGCTGTTTGATGACTCCAATAATTGTATTTCAGGAAGGCAGAATCAGAGGGGAGCTAAGAAATGTGCTCCCGCGATAAATCAACCAGTCGACTGCCATACGTTTAAGTGTGGGCATGCATCGAATCCTCCGGTCAGATTGCCGTATGAAGGAATCCTTCCACCTGCAGGTGGATACAGCTACGCCTCGCCTCCACCGCCTGCGTATCCGCGCTATTAATCATCTATCCACCACTTTGAAAACATTTTAGCACGCATATTTTAAGATTGGGTTTCTTAAATTGAAGAAACAATGCTGTTCTTCGAACTCTTTCCAACTAGGCCAAGTAAGTGTTCGTGGAATTCTCCACTTATACTACATTTTCTTTGATAGTTGTCGGAATATGATTCCTGTTCATCTTCTATTTCCACTCAGAATAATGCAGAAATACTGTCCAAAAGATCATTAACAGTCTAAGTTATTTCTCTTAAATG

Network for GWHGAAEX011660

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.5	LRR_8	143	195	4.80E-08
PF13855.5	LRR_8	278	336	8.60E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.320
SRP064423	SRR2545915	Juvenile tuber	1.270
SRP108465	SRR5643513	five period of Gastrodia elata	0.970
	SRR5643514	five period of Gastrodia elata	0.800
	SRR5643515	five period of Gastrodia elata	0.680
	SRR5643524	five period of Gastrodia elata	0.770
	SRR5643525	five period of Gastrodia elata	2.770
	SRR5643528	five period of Gastrodia elata	1.720
	SRR5643658	five period of Gastrodia elata	2.000
	SRR5643659	five period of Gastrodia elata	0.280
	SRR5643660	five period of Gastrodia elata	0.300
	SRR5643661	five period of Gastrodia elata	0.570
	SRR5643662	five period of Gastrodia elata	0.350
	SRR5643663	five period of Gastrodia elata	0.330
	SRR5643664	five period of Gastrodia elata	0.240
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.020
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.880
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.810
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.720
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.960
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.700
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.160
SRP279888	Gastro	Gastrodia elata tuber	0.40
	Juven	Juvenile tuber	0.20
	Mother_Gastro	Mother tuber of Gastrodia elata	1.77
	Mother_Juven	Mother tuber of Juvenile	0.59