Detail information of GWHGAAEX011662/evm.TU.scaffold_39.50


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16771.00E-42CCCH-type Zn-finger protein
nrgi|672143332|ref|XP_008795538.1|7.23E-65PREDICTED: putative zinc finger CCCH domain-containing protein 21 [Phoenix dactylifera]
Swissprottr|Q9C9N3|C3H14_ARATH4.00E-43Zinc finger CCCH domain-containing protein 14
trEMBLtr|A0A059BTI7|A0A059BTI7_EUCGR1.00E-49Uncharacterized protein {ECO:0000313|EMBL:KCW69304.1}
TAIRAT1G668101.00E-42Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003529690322970669+
Transcript Sequence

Network for GWHGAAEX011662

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00642.23zf-CCCH2082329.40E-08
PF00642.23zf-CCCH2452690.00026
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
K18753ZFP36L Cellular senescence map04218

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.020
SRR2545915Juvenile tuber2.150
SRP108465SRR5643513five period of Gastrodia elata0.480
SRR5643514five period of Gastrodia elata0.050
SRR5643515five period of Gastrodia elata0.450
SRR5643524five period of Gastrodia elata0.290
SRR5643525five period of Gastrodia elata2.490
SRR5643528five period of Gastrodia elata3.620
SRR5643658five period of Gastrodia elata3.460
SRR5643659five period of Gastrodia elata1.520
SRR5643660five period of Gastrodia elata1.720
SRR5643661five period of Gastrodia elata0.940
SRR5643662five period of Gastrodia elata3.930
SRR5643663five period of Gastrodia elata3.660
SRR5643664five period of Gastrodia elata3.590
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.350
SRR6049655Rhizomagastrodiae_C368-T10_good_12.900
SRR6049656Rhizomagastrodiae_C368-T07_good_11.740
SRR6049657Rhizomagastrodiae_C368-T07_good_11.820
SRR6049658Rhizomagastrodiae_C368-T04_good_11.400
SRR6049659Rhizomagastrodiae_C368-T04_good_12.340
SRR6049660Rhizomagastrodiae_C368-T01_good_11.480
SRR6049661Rhizomagastrodiae_C368-T04_good_12.320
SRR6049662Rhizomagastrodiae_C368-T01_good_10.940
SRR6049663Rhizomagastrodiae_C368-T01_good_11.940
SRR6049664Rhizomagastrodiae_C368-T10_good_13.160
SRR6049665Rhizomagastrodiae_C368-T10_good_13.160
SRP279888GastroGastrodia elata tuber 4.27
JuvenJuvenile tuber0.41
Mother_GastroMother tuber of Gastrodia elata 8.28
Mother_JuvenMother tuber of Juvenile 1.61