Detail information of GWHGAAEX011663/evm.TU.scaffold_39.55


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|435852984|ref|YP_007314303.1|3.00E-2930S ribosomal protein S17 [Halobacteroides halobius DSM 5150]
KOGKOG17402.00E-43Predicted mitochondrial/chloroplast ribosomal protein S17
nrgi|643741240|gb|KDP46744.1|9.72E-50hypothetical protein JCGZ_06532 [Jatropha curcas]
Swissprottr|P49504|RR17_ODOSI1.00E-2230S ribosomal protein S17, chloroplastic
trEMBLtr|A0A067LQC8|A0A067LQC8_JATCU4.00E-50Uncharacterized protein {ECO:0000313|EMBL:KDP46744.1}
TAIRAT3G188802.00E-43Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003531285323143683-
Transcript Sequence

Network for GWHGAAEX011663

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00366.19Ribosomal_S176729.30E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02961RP-S17, MRPS17, rpsQ Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.810
SRR2545915Juvenile tuber20.260
SRP108465SRR5643513five period of Gastrodia elata55.730
SRR5643514five period of Gastrodia elata71.350
SRR5643515five period of Gastrodia elata59.250
SRR5643524five period of Gastrodia elata61.870
SRR5643525five period of Gastrodia elata68.140
SRR5643528five period of Gastrodia elata60.170
SRR5643658five period of Gastrodia elata48.700
SRR5643659five period of Gastrodia elata60.490
SRR5643660five period of Gastrodia elata59.900
SRR5643661five period of Gastrodia elata59.600
SRR5643662five period of Gastrodia elata56.450
SRR5643663five period of Gastrodia elata59.650
SRR5643664five period of Gastrodia elata47.450
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_145.980
SRR6049655Rhizomagastrodiae_C368-T10_good_171.850
SRR6049656Rhizomagastrodiae_C368-T07_good_162.860
SRR6049657Rhizomagastrodiae_C368-T07_good_147.560
SRR6049658Rhizomagastrodiae_C368-T04_good_149.280
SRR6049659Rhizomagastrodiae_C368-T04_good_137.350
SRR6049660Rhizomagastrodiae_C368-T01_good_146.290
SRR6049661Rhizomagastrodiae_C368-T04_good_148.900
SRR6049662Rhizomagastrodiae_C368-T01_good_167.380
SRR6049663Rhizomagastrodiae_C368-T01_good_163.820
SRR6049664Rhizomagastrodiae_C368-T10_good_179.780
SRR6049665Rhizomagastrodiae_C368-T10_good_179.780
SRP279888GastroGastrodia elata tuber 46.44
JuvenJuvenile tuber53.59
Mother_GastroMother tuber of Gastrodia elata 37.76
Mother_JuvenMother tuber of Juvenile 29.99