Detail information of GWHGAAEX011664/evm.TU.scaffold_39.57
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672120124|ref|XP_008783319.1| | 3.06E-129 | PREDICTED: farnesylcysteine lyase [Phoenix dactylifera] |
| Swissprot | tr|P57681|PCYOX_ARATH | 1.00E-112 | Farnesylcysteine lyase (Precursor) |
| trEMBL | tr|M0RTF2|M0RTF2_MUSAM | 2.00E-125 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P18720_001} |
| TAIR | AT5G63910 | 5.00E-112 | farnesylcysteine lyase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000035 | 3289150 | 3309821 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011664
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07156.13 | Prenylcys_lyase | 23 | 266 | 2.90E-67 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05906 | PCYOX1, FCLY | Biosynthesis of secondary metabolites | map01110 |
| Biosynthesis of antibiotics | map01130 | ||
| Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030328 | Biological Process | prenylcysteine catabolic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016670 | Molecular Function | oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.440 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.930 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.10 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |