Detail information of GWHGAAEX011668/evm.TU.scaffold_39.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|294012939|ref|YP_003546399.1| | 7.00E-06 | putative CTD phosphatase [Sphingobium japonicum UT26S] |
| KOG | KOG1605 | 2.00E-85 | TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) |
| nr | gi|672120196|ref|XP_008783355.1| | 0 | PREDICTED: ubiquitin-like domain-containing CTD phosphatase [Phoenix dactylifera] |
| Swissprot | tr|Q8W3M6|UBCP_ARATH | 6.00E-177 | Ubiquitin-like domain-containing CTD phosphatase |
| trEMBL | tr|M0T1S1|M0T1S1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P25960_001} |
| TAIR | HS21450802_2 | 2.00E-85 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000035 | 4089255 | 4106169 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011668
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00240.22 | ubiquitin | 29 | 70 | 6.00E-07 |
| PF03031.17 | NIF | 160 | 322 | 8.70E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004721 | Molecular Function | phosphoprotein phosphatase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 94.170 |
| SRR2545915 | Juvenile tuber | 59.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.680 |
| SRR5643514 | five period of Gastrodia elata | 31.330 | |
| SRR5643515 | five period of Gastrodia elata | 29.630 | |
| SRR5643524 | five period of Gastrodia elata | 30.370 | |
| SRR5643525 | five period of Gastrodia elata | 30.600 | |
| SRR5643528 | five period of Gastrodia elata | 30.470 | |
| SRR5643658 | five period of Gastrodia elata | 29.140 | |
| SRR5643659 | five period of Gastrodia elata | 36.920 | |
| SRR5643660 | five period of Gastrodia elata | 43.760 | |
| SRR5643661 | five period of Gastrodia elata | 34.700 | |
| SRR5643662 | five period of Gastrodia elata | 38.370 | |
| SRR5643663 | five period of Gastrodia elata | 40.320 | |
| SRR5643664 | five period of Gastrodia elata | 43.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 47.890 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 62.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 63.940 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 57.880 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 67.370 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 55.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 54.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 40.990 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 36.670 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 36.670 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 35.37 |
| Juven | Juvenile tuber | 52.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.45 | |
| Mother_Juven | Mother tuber of Juvenile | 45.58 |