Detail information of GWHGAAEX011671/evm.TU.scaffold_39.67
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672120124|ref|XP_008783319.1| | 0 | PREDICTED: farnesylcysteine lyase [Phoenix dactylifera] |
| Swissprot | tr|P57681|PCYOX_ARATH | 0 | Farnesylcysteine lyase (Precursor) |
| trEMBL | tr|M0RTF2|M0RTF2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P18720_001} |
| TAIR | AT5G63910 | 0 | farnesylcysteine lyase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000035 | 4381268 | 4402078 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011671
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13450.5 | NAD_binding_8 | 29 | 97 | 8.20E-11 |
| PF07156.13 | Prenylcys_lyase | 160 | 487 | 2.90E-92 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05906 | PCYOX1, FCLY | Biosynthesis of secondary metabolites | map01110 |
| Biosynthesis of antibiotics | map01130 | ||
| Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0030328 | Biological Process | prenylcysteine catabolic process |
| GO:0016670 | Molecular Function | oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 35.850 |
| SRR2545915 | Juvenile tuber | 39.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.730 |
| SRR5643514 | five period of Gastrodia elata | 37.110 | |
| SRR5643515 | five period of Gastrodia elata | 38.310 | |
| SRR5643524 | five period of Gastrodia elata | 40.960 | |
| SRR5643525 | five period of Gastrodia elata | 38.930 | |
| SRR5643528 | five period of Gastrodia elata | 40.070 | |
| SRR5643658 | five period of Gastrodia elata | 41.860 | |
| SRR5643659 | five period of Gastrodia elata | 33.540 | |
| SRR5643660 | five period of Gastrodia elata | 31.200 | |
| SRR5643661 | five period of Gastrodia elata | 33.100 | |
| SRR5643662 | five period of Gastrodia elata | 27.410 | |
| SRR5643663 | five period of Gastrodia elata | 32.200 | |
| SRR5643664 | five period of Gastrodia elata | 22.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 36.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 65.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 37.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 42.310 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 38.240 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 40.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 38.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 42.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 42.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 54.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 54.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.01 |
| Juven | Juvenile tuber | 49.43 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 44.75 | |
| Mother_Juven | Mother tuber of Juvenile | 60.19 |