Detail information of GWHGAAEX011674/evm.TU.scaffold_39.73
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0674 | 1.00E-175 | Calreticulin |
| nr | gi|695075523|ref|XP_009385001.1| | 0 | PREDICTED: calreticulin-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O81919|CALR_BETVU | 0 | Calreticulin (Precursor) |
| trEMBL | tr|M0RVB5|M0RVB5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P25350_001} |
| TAIR | AT1G56340 | 1.00E-175 | calreticulin 1a |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000035 | 4702161 | 4706219 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011674
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00262.17 | Calreticulin | 29 | 264 | 8.50E-55 |
| PF00262.17 | Calreticulin | 265 | 339 | 4.20E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08057 | CALR | Protein processing in endoplasmic reticulum | map04141 |
| Phagosome | map04145 | ||
| Antigen processing and presentation | map04612 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006457 | Biological Process | protein folding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005509 | Molecular Function | calcium ion binding |
| GO:0051082 | Molecular Function | unfolded protein binding |
| GO:0005783 | Cellular Component | endoplasmic reticulum |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.000 |
| SRR2545915 | Juvenile tuber | 271.930 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 43.200 |
| SRR5643514 | five period of Gastrodia elata | 87.580 | |
| SRR5643515 | five period of Gastrodia elata | 91.240 | |
| SRR5643524 | five period of Gastrodia elata | 154.710 | |
| SRR5643525 | five period of Gastrodia elata | 3.680 | |
| SRR5643528 | five period of Gastrodia elata | 4.830 | |
| SRR5643658 | five period of Gastrodia elata | 7.620 | |
| SRR5643659 | five period of Gastrodia elata | 1.690 | |
| SRR5643660 | five period of Gastrodia elata | 1.370 | |
| SRR5643661 | five period of Gastrodia elata | 2.220 | |
| SRR5643662 | five period of Gastrodia elata | 3.080 | |
| SRR5643663 | five period of Gastrodia elata | 4.030 | |
| SRR5643664 | five period of Gastrodia elata | 2.780 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 53.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 87.250 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 91.120 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 76.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.880 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 46.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 100.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 62.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 80.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 80.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.08 |
| Juven | Juvenile tuber | 0.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.78 | |
| Mother_Juven | Mother tuber of Juvenile | 0.59 |