Detail information of GWHGAAEX011675/evm.TU.scaffold_39.74


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG15884.00E-90RNA-binding protein Sam68 and related KH domain proteins
nrgi|743806894|ref|XP_010927868.1|2.21E-160PREDICTED: KH domain-containing protein At1g09660/At1g09670-like [Elaeis guineensis]
Swissprottr|Q8GWR3|QKIL5_ARATH2.00E-111KH domain-containing protein At1g09660/At1g09670
trEMBLtr|M0TVI4|M0TVI4_MUSAM2.00E-157Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P32320_001}
TAIRAT4G26480_24.00E-90Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003549200774948569-
Transcript Sequence

Network for GWHGAAEX011675

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16544.4STAR_dimer36788.00E-09
PF00013.28KH_11551920.00023
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms150.600
SRR2545915Juvenile tuber140.450
SRP108465SRR5643513five period of Gastrodia elata60.950
SRR5643514five period of Gastrodia elata61.630
SRR5643515five period of Gastrodia elata63.720
SRR5643524five period of Gastrodia elata64.220
SRR5643525five period of Gastrodia elata55.390
SRR5643528five period of Gastrodia elata62.380
SRR5643658five period of Gastrodia elata60.620
SRR5643659five period of Gastrodia elata66.120
SRR5643660five period of Gastrodia elata71.110
SRR5643661five period of Gastrodia elata64.650
SRR5643662five period of Gastrodia elata63.920
SRR5643663five period of Gastrodia elata69.250
SRR5643664five period of Gastrodia elata63.780
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_168.590
SRR6049655Rhizomagastrodiae_C368-T10_good_177.290
SRR6049656Rhizomagastrodiae_C368-T07_good_160.680
SRR6049657Rhizomagastrodiae_C368-T07_good_175.770
SRR6049658Rhizomagastrodiae_C368-T04_good_154.680
SRR6049659Rhizomagastrodiae_C368-T04_good_160.550
SRR6049660Rhizomagastrodiae_C368-T01_good_158.640
SRR6049661Rhizomagastrodiae_C368-T04_good_150.430
SRR6049662Rhizomagastrodiae_C368-T01_good_151.120
SRR6049663Rhizomagastrodiae_C368-T01_good_150.660
SRR6049664Rhizomagastrodiae_C368-T10_good_156.450
SRR6049665Rhizomagastrodiae_C368-T10_good_156.450
SRP279888GastroGastrodia elata tuber 83.09
JuvenJuvenile tuber131.97
Mother_GastroMother tuber of Gastrodia elata 54.94
Mother_JuvenMother tuber of Juvenile 99.00