Detail information of GWHGAAEX011685/evm.TU.scaffold_39.93


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|568303084|ref|YP_008975369.1|2.00E-111bacterial peptide chain release factor 2 (bRF-2) [Phaeobacter gallaeciensis DSM 26640]
KOGKOG27260Mitochondrial polypeptide chain release factor
nrgi|672115894|ref|XP_008781100.1|0PREDICTED: peptide chain release factor 1-like, mitochondrial [Phoenix dactylifera]
Swissprottr|F4I532|PRFB2_ARATH0Peptide chain release factor PrfB2, chloroplastic {ECO:0000303|PubMed:21771930} (Precursor)
trEMBLtr|A0A061FAZ4|A0A061FAZ4_THECC0Peptide chain release factor 2 {ECO:0000313|EMBL:EOY11644.1}
TAIRAT1G563500Peptide chain release factor 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003557393245775090-
Transcript Sequence

Network for GWHGAAEX011685

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03462.17PCRF1503373.50E-50
PF00472.19RF-13504564.30E-37
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006415Biological Processtranslational termination
GO:0003747Molecular Functiontranslation release factor activity
GO:0016149Molecular Functiontranslation release factor activity, codon specific
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.060
SRR2545915Juvenile tuber21.410
SRP108465SRR5643513five period of Gastrodia elata18.760
SRR5643514five period of Gastrodia elata20.170
SRR5643515five period of Gastrodia elata16.300
SRR5643524five period of Gastrodia elata18.110
SRR5643525five period of Gastrodia elata12.740
SRR5643528five period of Gastrodia elata11.910
SRR5643658five period of Gastrodia elata8.520
SRR5643659five period of Gastrodia elata23.430
SRR5643660five period of Gastrodia elata25.320
SRR5643661five period of Gastrodia elata23.180
SRR5643662five period of Gastrodia elata26.340
SRR5643663five period of Gastrodia elata24.890
SRR5643664five period of Gastrodia elata25.830
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.910
SRR6049655Rhizomagastrodiae_C368-T10_good_115.260
SRR6049656Rhizomagastrodiae_C368-T07_good_115.090
SRR6049657Rhizomagastrodiae_C368-T07_good_116.800
SRR6049658Rhizomagastrodiae_C368-T04_good_118.660
SRR6049659Rhizomagastrodiae_C368-T04_good_121.430
SRR6049660Rhizomagastrodiae_C368-T01_good_118.300
SRR6049661Rhizomagastrodiae_C368-T04_good_119.840
SRR6049662Rhizomagastrodiae_C368-T01_good_114.970
SRR6049663Rhizomagastrodiae_C368-T01_good_116.060
SRR6049664Rhizomagastrodiae_C368-T10_good_116.320
SRR6049665Rhizomagastrodiae_C368-T10_good_116.320
SRP279888GastroGastrodia elata tuber 31.28
JuvenJuvenile tuber36.18
Mother_GastroMother tuber of Gastrodia elata 20.60
Mother_JuvenMother tuber of Juvenile 35.42