Detail information of GWHGAAEX011688/evm.TU.scaffold_39.95


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|479127157|ref|YP_005067117.1|3.00E-124uroporphyrinogen III decarboxylase [Arthrospira platensis NIES-39]
KOGKOG28720Uroporphyrinogen decarboxylase
nrgi|695036317|ref|XP_009405610.1|0PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like isoform X1 [Musa acuminata subsp. malaccensis]
Swissprottr|Q93ZB6|DCUP1_ARATH0Uroporphyrinogen decarboxylase 1, chloroplastic (Precursor)
trEMBLtr|M0T919|M0T919_MUSAM0Uroporphyrinogen decarboxylase {ECO:0000256|RuleBase:RU000554}
TAIRAT3G149300Uroporphyrinogen decarboxylase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003558720605909115+
Transcript Sequence

Network for GWHGAAEX011688

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01208.16URO-D13181.70E-99
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01599hemE, UROD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0006779Biological Processporphyrin-containing compound biosynthetic process
GO:0004853Molecular Functionuroporphyrinogen decarboxylase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.530
SRR2545915Juvenile tuber11.250
SRP108465SRR5643513five period of Gastrodia elata6.660
SRR5643514five period of Gastrodia elata6.910
SRR5643515five period of Gastrodia elata7.220
SRR5643524five period of Gastrodia elata5.120
SRR5643525five period of Gastrodia elata8.040
SRR5643528five period of Gastrodia elata7.560
SRR5643658five period of Gastrodia elata7.850
SRR5643659five period of Gastrodia elata11.970
SRR5643660five period of Gastrodia elata13.810
SRR5643661five period of Gastrodia elata13.620
SRR5643662five period of Gastrodia elata14.420
SRR5643663five period of Gastrodia elata14.660
SRR5643664five period of Gastrodia elata12.820
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_16.350
SRR6049655Rhizomagastrodiae_C368-T10_good_14.210
SRR6049656Rhizomagastrodiae_C368-T07_good_17.490
SRR6049657Rhizomagastrodiae_C368-T07_good_18.000
SRR6049658Rhizomagastrodiae_C368-T04_good_17.940
SRR6049659Rhizomagastrodiae_C368-T04_good_16.390
SRR6049660Rhizomagastrodiae_C368-T01_good_18.650
SRR6049661Rhizomagastrodiae_C368-T04_good_18.180
SRR6049662Rhizomagastrodiae_C368-T01_good_19.930
SRR6049663Rhizomagastrodiae_C368-T01_good_18.980
SRR6049664Rhizomagastrodiae_C368-T10_good_19.020
SRR6049665Rhizomagastrodiae_C368-T10_good_19.020
SRP279888GastroGastrodia elata tuber 12.64
JuvenJuvenile tuber6.06
Mother_GastroMother tuber of Gastrodia elata 3.43
Mother_JuvenMother tuber of Juvenile 3.66