Gene detail

Detail information of GWHGAAEX011689/evm.TU.scaffold_39.97

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|313676038\|ref\|YP_004054034.1\|	2.00E-15	chaperone protein dnaj [Marivirga tractuosa DSM 4126]
KOG	KOG0951	0	RNA helicase BRR2, DEAD-box superfamily
nr	gi\|672138824\|ref\|XP_008793178.1\|	0	PREDICTED: translocation protein SEC63 homolog isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q0WT48\|DNJ21_ARATH	0	DnaJ protein ERDJ2A
trEMBL	tr\|M0S2W7\|M0S2W7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P25100_001}
TAIR	AT1G79940_2	0	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000035	5936031	5984822	-

Transcript Sequence
>GWHTAAEX011689 GTTTTTTTTTGTAGAAAAGGTGAGCCCTCTCTTATTTCAAGAGCAATTTCTTTTTGCATAGGTTAGCGTAATCAGCCTTCCACTGCGTGGCAGAGGAGTGGATAAATACGATTGTCGAAGACGGCTGGTCTCAGCGAGATCATCGGTGTTTGCTAGGTTTTCTGTGTCCAGCTCCCGGAGTCAAAGAAGAAAGGAATGGCTACCTCCGAGGAGAATGGTTCACTTTTCCCTATATTTATTCTCACTATGATGGCTCTTTCTGTAGTACCATACACTCTTTTTAGACTATCACATTCTGTAACAAGAAAAACAAAAACCATCCATTGCCAATGCTCTGTATGCTCACGGTCTGGAAAGTACAAAAGATCCATTTTAAAACGGATCTCAAACTTTTCTACTTGCAATAATCTGACAATTCTGCTCTTATGGGTGATTATGGCAATTCTAGTTTATTACATCAAACATACAAGTTCTGAGTTCCAACTATTTGAACCATTTAGCATCCTTGGATTGACTCCAGGAGCATCAGATTCAGAAATAAAGAAGGCATATAGAAAGCTCTCTATTTTGTATCACCCGGATAAAAACCCTGATCCAGAGGCTCATAAATATTTTGTAGAATCTATCTCAAAGGCTTACCAGGCTTTGACAGATCCTGTATCTCGTGAAAATTATGAAAAATATGGCCACCCAGATGGTCGACAGGGGCTTGAAATGGGGATTGCATTACCTCAATTTCTACTTAACTTTGATGGAGCCTCTGGAGGGATACTTCTTCTTGGAATTGTTGGCGTGTGCATTCTTTTGCCTCTTATAATAGCAGTGATATATCTATCACGATCAGCAAAGTATACAGGGAATTATGTCATGCATCAAACTTTGTCAACTTACTTCTATTTCATGAAACCTTCATTAGCACCAAGCAAGGTCATGGATGTTTTTATTAAGGCTGCGGAATATGTGGAAATGCCTATCCGTAGAAGTGACACTGAACCGCTTCAGAAGTTATTTGTGGCAGTTCGAAGTGAGTTGAATTTGGACCTAAAAAATATCAAGACAGAGCAAGCTAAGTTTTGGAAACAGCATCCTGCATTGGTTAAGATGGAACTCTTGGTTCAAGCTCAATTAACTCGTGAGTCGGCCAGTTTATCTTCTTCTTTGCTGAGTGATTTCAAACGCATGCTTGAACTCGCTCCTCGCCTTCTTGAAGAGCTTGTCAAGATAGCTGTTCTACCCCGCACTTCTTTGGGTCACGGATGGTTAAGACCAGCGATTGGGGTGATTGAGCTTTCACAAAGTATTGTTCAGGCTGTACCTCTCAGTGCAAGAAAAGCCGGAGGAGGGAATTCAGAAGGAATAGCTGCATTTTTGCAACTTCCACATTTCAGCGAGACAGTTTTCAAGAAAATTGCCCGCAAGAAAGTGCGGAGCTTTCAGGATCTGCGTGAAATGGGCATTCAGGAACGCCATGATCTTCTGGTTCAAGCTGCTGGGTTTTCAGATTCGGAGGCCTGCGACACAGAGATCGTGCTCGAAATGATGCCGACCATCACTCTGGAAGTCGCCTGCGAGACGGAGGGAGAAGAGTGCATTCAGGAGGGTGATCTTGTGACAATGTACGCCTGGATTAACATCAGCAGGAGGAACGGGCTGATTGGAGCCCTCCCTCATAGTCCTTACTTTCCTTTTCACAAGGAGGAGAATTTCTGGCTGTTGCTCGCCGACCCGACATCGAACGAAGTCTGGGTTTCTCAGAAGGTGAACTTCATGGACGAGTCCTCGGCCATCACTGCAGCATCCAAGGTAATCCAAGAGACCAAGGAAGCATTGGGCGCAAGCCTGAAGGAGGCCAACTCTGCCGTCATAGCAGCCATTGAGAAGGTGAGGAGCGGCTCAAGGCTAGTGATGGGTAAATTCCATGCCCCTGCTGAAGGCACCTACAATTTATGTTCTTACTGCCTCTGCGATGCCTGGATTGGTTGTGACACAAAGGCCAGCCTGAAGATCAAGGTTGTAAAGCGAAGCCGGACGGGGACGAGAAGCCACATGGTGGCTGAAGAGGGATCTGTGGCAACGACTGTTGAGGATGGCATCGAGGAGGAAGAGGAGGACGACGAAGAGGGATACGATGATTATGAGAGCGAGTACAGCGACGATGAGGATGACGACAAGGGAAAAAATAACAAGGTTGTCAATGGTGTCTTGAATGTGAAGGAGCATGTTAGTGCAACCGAATCTTCTGCCTCTGATGATGATTAGATCTCTCTTTTCTTTTCCTTTTTTTTATTTTTTTTTGAGATTTTTCAAATCTGTAACCTTAAAAGCAGGCGATGATAAATCCATCACCTTTCACACCCGCACAGGTGAAAAATGTTAAGGCCGCATGCTATTTTTTGCCTATTTGCAAAATATTAGACTAATGATCCTCTTTCTACTGCGTTATGAGATTCGTGGCCTGCGGCAGTCCTATTTGATCTTTTTATTGCTATAGATTTGTCACCACTTACCTTACGATAGATTTGTAACTGATTTTCAAAATTTGCAGCTGCCCCAAGC

Network for GWHGAAEX011689

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00226.30	DnaJ	100	161	2.80E-20
PF02889.15	Sec63	222	602	9.90E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09540	SEC63, DNAJC23	Protein export	map03060
K09540	SEC63, DNAJC23	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	44.310
SRP064423	SRR2545915	Juvenile tuber	36.630
SRP108465	SRR5643513	five period of Gastrodia elata	44.730
	SRR5643514	five period of Gastrodia elata	49.190
	SRR5643515	five period of Gastrodia elata	45.500
	SRR5643524	five period of Gastrodia elata	47.950
	SRR5643525	five period of Gastrodia elata	51.140
	SRR5643528	five period of Gastrodia elata	60.150
	SRR5643658	five period of Gastrodia elata	63.850
	SRR5643659	five period of Gastrodia elata	31.550
	SRR5643660	five period of Gastrodia elata	34.100
	SRR5643661	five period of Gastrodia elata	31.880
	SRR5643662	five period of Gastrodia elata	33.780
	SRR5643663	five period of Gastrodia elata	35.750
	SRR5643664	five period of Gastrodia elata	31.950
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	44.360
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.510
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	38.490
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	36.530
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.650
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	46.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	46.540
SRP279888	Gastro	Gastrodia elata tuber	39.29
	Juven	Juvenile tuber	44.03
	Mother_Gastro	Mother tuber of Gastrodia elata	55.54
	Mother_Juven	Mother tuber of Juvenile	36.54