Detail information of GWHGAAEX011692/evm.TU.scaffold_392.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|389874389|ref|YP_006373745.1| | 1.00E-137 | Cytochrome b/b6-like protein [Tistrella mobilis KA081020-065] |
| KOG | KOG4663 | 0 | Cytochrome b |
| nr | gi|375126819|gb|AFA35936.1| | 0 | apocytochrome b, partial (mitochondrion) [Phalaenopsis violacea] |
| Swissprot | tr|P05718|CYB_VICFA | 0 | Cytochrome b |
| trEMBL | tr|I1TJB7|I1TJB7_9ASPA | 0 | Cytochrome b {ECO:0000256|RuleBase:RU000300} (Fragment) |
| TAIR | ATMI019 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000388 | 76057 | 79097 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011692
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00033.18 | Cytochrome_B | 26 | 213 | 3.00E-78 |
| PF00032.16 | Cytochrom_B_C | 267 | 341 | 3.10E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00412 | CYTB, petB | Metabolic pathways | map01100 |
| Oxidative phosphorylation | map00190 | ||
| Two-component system | map02020 | ||
| Cardiac muscle contraction | map04260 | ||
| Thermogenesis | map04714 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0022904 | Biological Process | respiratory electron transport chain |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0009055 | Molecular Function | electron carrier activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.060 |
| SRR5643514 | five period of Gastrodia elata | 0.140 | |
| SRR5643515 | five period of Gastrodia elata | 0.060 | |
| SRR5643524 | five period of Gastrodia elata | 0.100 | |
| SRR5643525 | five period of Gastrodia elata | 0.060 | |
| SRR5643528 | five period of Gastrodia elata | 0.060 | |
| SRR5643658 | five period of Gastrodia elata | 0.050 | |
| SRR5643659 | five period of Gastrodia elata | 0.260 | |
| SRR5643660 | five period of Gastrodia elata | 0.110 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.130 | |
| SRR5643664 | five period of Gastrodia elata | 0.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.02 |
| Juven | Juvenile tuber | 0.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.17 | |
| Mother_Juven | Mother tuber of Juvenile | 0.40 |