Detail information of GWHGAAEX011693/evm.TU.scaffold_392.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|294055207|ref|YP_003548865.1| | 4.00E-19 | 30S ribosomal protein S14 [Coraliomargarita akajimensis DSM 45221] |
| KOG | KOG1741 | 8.00E-34 | Mitochondrial/chloroplast ribosomal protein S14/S29 |
| nr | gi|224020980|ref|YP_002608213.1| | 9.13E-60 | ribosomal protein S14 [Carica papaya] |
| Swissprot | tr|P14875|RT14_OENBE | 8.00E-58 | Ribosomal protein S14, mitochondrial |
| trEMBL | tr|B9U3N2|B9U3N2_CARPA | 3.00E-60 | Ribosomal protein S14 {ECO:0000313|EMBL:ACB20502.1} |
| TAIR | AT2G34520_2 | 8.00E-34 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000388 | 80263 | 80565 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011693
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00253.20 | Ribosomal_S14 | 46 | 99 | 9.20E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02954 | RP-S14, MRPS14, rpsN | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.120 |
| SRR2545915 | Juvenile tuber | 0.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.710 |
| SRR5643514 | five period of Gastrodia elata | 2.740 | |
| SRR5643515 | five period of Gastrodia elata | 0.790 | |
| SRR5643524 | five period of Gastrodia elata | 3.250 | |
| SRR5643525 | five period of Gastrodia elata | 1.350 | |
| SRR5643528 | five period of Gastrodia elata | 2.700 | |
| SRR5643658 | five period of Gastrodia elata | 1.370 | |
| SRR5643659 | five period of Gastrodia elata | 3.300 | |
| SRR5643660 | five period of Gastrodia elata | 13.770 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 1.640 | |
| SRR5643663 | five period of Gastrodia elata | 1.150 | |
| SRR5643664 | five period of Gastrodia elata | 0.710 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.060 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.560 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.970 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.560 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.70 |
| Juven | Juvenile tuber | 11.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.25 | |
| Mother_Juven | Mother tuber of Juvenile | 27.62 |