Gene detail

Detail information of GWHGAAEX011703/evm.TU.scaffold_4.1

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2283	0	Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases
nr	gi\|695045353\|ref\|XP_009410466.1\|	0	PREDICTED: uncharacterized protein LOC103992479 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9SK28\|FH18_ARATH	1.00E-06	Formin-like protein 18
trEMBL	tr\|M0RME6\|M0RME6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P29220_001}
TAIR	AT3G19420	0	PTEN 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	3496	67753	+

Transcript Sequence
>GWHTAAEX011703 ATTTTCCTATATGATCGTCGGCACCTTCGGCGGACAATCTATTGCTAGGGATAGATCAGAGTTCTTCGCGTTCGTCCTCCGGAAGCTCGTTACCGCCAGACGCAGCCCCGGTGCACCGCCTTTGCTTTGCCCCGACGCGGTCGTCTCTCTGACGCCTCGCCGGCCGCGGTCGCCTCGCTGACGCGCTCGCTCACCTCAATCGCCTCGTGACGTGCTCGCCTAAATTGCTCGCAGAGAGCATTACAAAAGCACACCCACATTGCTCGGTGCATTATCAGATCTAACAAATACTTTCGAGTTGTTGTTGATTTGTTTTTTATGGAGTCATCACAATCTGATTCTTCTTCTCCACGCCTAGTTCCGACCGATACTCAGCATTCTGCATCTGGGAAAGACTCGCATGTACGGGAATCATCATCATTTATGTCTTCTTCTGGAATCACCTCCTGGGCTAAAAACTTGAAGATACCACAGACAACAGTTCAAGATGATCCTCAGACTGGAAATGCTGGAAAATCAACTTTTTCTCGTTTTGCCAGCGGATTGGGACTACGATTATCCCCCAAGTCACCTAAGAAAGATGAAAATTCTGAGGGTGCAACAACCCCTACTCAACAAGGTGTTTTTGGTTCCTTTACTAAAGGTGTTGTCGACACATCAAAAAATGCAGTCAAAGCTGTACAAGTGAAAGCTCGTCACATTGTCTCTCAAAACAAAAGGAGATATCAGGAAGGTGGATTTGATTTGGACCTTACTTATATCACAGAAAATATAATTGCTATGGGTTTCCCTGCAGGTGATATCAGCTCAGGGTTTTTTGGTTATGTTGAGGGATTTTACCGTAACCACATGGAAGAAGTGATACGGTTTTTTGAAATTCACCACAAGGGAAAGTACAAAGTATACAACCTTTGCTCAGAGAGACTTTATGATGCATCACTACTTGAGAGCAAGGTTGCTTGTTTCCCATTTGATGATCATAATTGCCCGCCAATTGAACTTGTAACATTATTTTGCCAAAGTGCGTATAATTGGTTAAAGGAAGACATTGAAAATGTTGTAGTTGTGCATTGCAAAGCTGGTATGGCAAGAACGGGCTTGATGATATCTAGTCTTCTTTTATATCTGAAGTTTTTTCCAACTGCTGAGGAGTCAATGGAGTATTACAACCAGAAAAGATGCATAGATGGGAAGGGCCTTGTTCTCCCAAGTCAGATTAGATATGTCAAATATTTTGAACGCATTTTAACATATTTCAATGGAGAAAATCAACCAGGTCGCAGATGTATGCTAAGGGGTTTCCGGCTGCATAGATGCCCTTATTGGATAAGGCCTTCGATTTCTGTCTCAAATCATAATGGTGTTCTTTTTTCTACCAAAAAGCATTCCAGGACTAAAGACTTACTGCCTGAAGATTTCTGGTTTAGTGCACCAAAGAAAGGCATTATGGTGTTTGCTCTGCCTGGTGAATCTGGTCTTACAGAAGTGGCTGGGGATTTCAAAATCCAATTCCATGACCGCCAAGGAGATTTTTATTGTTGGTTGAACACTACAATGACAGAAAATAGGAAGATCCTGAACACCTCAGATCTTGATGGCTTTGATAAGAGAAAACTACCTTCACCGGGATTTCAAGTTGAGGTTGTGCTTGCGGACTATAACTGCCCTCCTCCTCCGCCGCTTCAGCCTTCCCTCCCATCTCCCGACAACAAAACGGGCGGGGGATCGCCGGCAATGAGCATCCCCTCTAGCGAATGCAATGTGCCGCTCCCAACAAACACGGCCACTAAATCTCGAAGCAAGGATGATGTTTTCTCCGATAGCGAGGCTGAAGAGGGGACAGGTTCCGCAAAAGGCACTCAATCCCCTCGGTCCGCGCCCGACGTGCCCGCTGATGAACTCAAAGCTGAGGCACATTCGAAAGATGGATTGAAAAGCATAACCCGAGGGATTGAACGGGTTTCCATTGAACCTGAGTGTGCTGTTCTAGAGAAGCCGAGAAGCGAGGAGGAGAATATTTTGCCGACATTTCGAACCCCCGAGCTCGAGACCACAAGCACGAGCGAGTTCAAGGCCATCGCCGCCGATGCATCGGTTTTCTCTTTCGGTGATGAGGACTACGATAGCGAGTAGCCAAAATGTTCAAGAGTTGTAGATAGAAGCTTTTATGATATACATGTGTATGCATAATGCGTTGATGTTTTTGATAATTGTTCATTTTTACTATTATATTTTACATTTGTGAAGAAATTTGTTATTTTTTATTATTCTTTTATCTTACTGTGACTTTTGGAATTATTGGGGAAACGAAATACTTAAACTTTTTTGTACTCTTCAAGTGATGTTTACACTTGCTAAGCATAGGAAATGTCTTATTTGCAC

Network for GWHGAAEX011703

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01110	PTEN	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		FoxO signaling pathway	map04068
		Phosphatidylinositol signaling system	map04070
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		p53 signaling pathway	map04115
		Cellular senescence	map04218
		Focal adhesion	map04510
		Axon regeneration	map04361
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0016311	Biological Process	dephosphorylation
GO:0004725	Molecular Function	protein tyrosine phosphatase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.980
SRP064423	SRR2545915	Juvenile tuber	36.650
SRP108465	SRR5643513	five period of Gastrodia elata	37.090
	SRR5643514	five period of Gastrodia elata	37.760
	SRR5643515	five period of Gastrodia elata	37.310
	SRR5643524	five period of Gastrodia elata	40.800
	SRR5643525	five period of Gastrodia elata	42.690
	SRR5643528	five period of Gastrodia elata	54.380
	SRR5643658	five period of Gastrodia elata	61.060
	SRR5643659	five period of Gastrodia elata	38.860
	SRR5643660	five period of Gastrodia elata	39.580
	SRR5643661	five period of Gastrodia elata	37.180
	SRR5643662	five period of Gastrodia elata	43.330
	SRR5643663	five period of Gastrodia elata	44.040
	SRR5643664	five period of Gastrodia elata	45.590
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	60.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.140
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.700
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	33.670
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.560
SRP279888	Gastro	Gastrodia elata tuber	46.71
	Juven	Juvenile tuber	51.64
	Mother_Gastro	Mother tuber of Gastrodia elata	57.56
	Mother_Juven	Mother tuber of Juvenile	66.35