Detail information of GWHGAAEX011706/evm.TU.scaffold_4.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08005.00E-09FOG: Predicted E3 ubiquitin ligase
nrgi|697119431|ref|XP_009613668.1|1.29E-15PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Nicotiana tomentosiformis]
Swissprottr|Q9ZT49|ATL45_ARATH2.00E-09RING-H2 finger protein ATL45
trEMBLtr|D7T9E7|D7T9E7_VITVI1.00E-13Putative uncharacterized protein {ECO:0000313|EMBL:CBI27118.3}
TAIRAT4G354805.00E-09RING-H2 finger A3B

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000117898280151-
Transcript Sequence

Network for GWHGAAEX011706

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module5

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_240861.20E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.400
SRR2545915Juvenile tuber0.710
SRP108465SRR5643513five period of Gastrodia elata20.840
SRR5643514five period of Gastrodia elata47.500
SRR5643515five period of Gastrodia elata17.150
SRR5643524five period of Gastrodia elata40.280
SRR5643525five period of Gastrodia elata39.870
SRR5643528five period of Gastrodia elata25.160
SRR5643658five period of Gastrodia elata18.050
SRR5643659five period of Gastrodia elata0.660
SRR5643660five period of Gastrodia elata0.530
SRR5643661five period of Gastrodia elata0.200
SRR5643662five period of Gastrodia elata0.200
SRR5643663five period of Gastrodia elata0.200
SRR5643664five period of Gastrodia elata0.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.070
SRR6049655Rhizomagastrodiae_C368-T10_good_111.260
SRR6049656Rhizomagastrodiae_C368-T07_good_111.540
SRR6049657Rhizomagastrodiae_C368-T07_good_110.640
SRR6049658Rhizomagastrodiae_C368-T04_good_118.800
SRR6049659Rhizomagastrodiae_C368-T04_good_119.790
SRR6049660Rhizomagastrodiae_C368-T01_good_17.020
SRR6049661Rhizomagastrodiae_C368-T04_good_18.290
SRR6049662Rhizomagastrodiae_C368-T01_good_19.700
SRR6049663Rhizomagastrodiae_C368-T01_good_111.600
SRR6049664Rhizomagastrodiae_C368-T10_good_121.040
SRR6049665Rhizomagastrodiae_C368-T10_good_121.040
SRP279888GastroGastrodia elata tuber 0.19
JuvenJuvenile tuber2.81
Mother_GastroMother tuber of Gastrodia elata 19.30
Mother_JuvenMother tuber of Juvenile 5.44