Detail information of GWHGAAEX011707/evm.TU.scaffold_4.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG26691.00E-81Regulator of nuclear mRNA
nrgi|672137452|ref|XP_008792455.1|0PREDICTED: UPF0400 protein C337.03-like [Phoenix dactylifera]
trEMBLtr|A0A061F7B0|A0A061F7B0_THECC3.00E-162ENTH/VHS family protein {ECO:0000313|EMBL:EOY10399.1}
TAIRAT5G651801.00E-81ENTH/VHS family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000011107933174162-
Transcript Sequence

Network for GWHGAAEX011707

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04818.12CTD_bind571187.00E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.730
SRR2545915Juvenile tuber18.870
SRP108465SRR5643513five period of Gastrodia elata20.670
SRR5643514five period of Gastrodia elata18.620
SRR5643515five period of Gastrodia elata19.880
SRR5643524five period of Gastrodia elata18.410
SRR5643525five period of Gastrodia elata30.010
SRR5643528five period of Gastrodia elata27.240
SRR5643658five period of Gastrodia elata27.040
SRR5643659five period of Gastrodia elata22.560
SRR5643660five period of Gastrodia elata23.010
SRR5643661five period of Gastrodia elata22.640
SRR5643662five period of Gastrodia elata23.450
SRR5643663five period of Gastrodia elata19.910
SRR5643664five period of Gastrodia elata23.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.390
SRR6049655Rhizomagastrodiae_C368-T10_good_125.390
SRR6049656Rhizomagastrodiae_C368-T07_good_119.500
SRR6049657Rhizomagastrodiae_C368-T07_good_119.190
SRR6049658Rhizomagastrodiae_C368-T04_good_117.430
SRR6049659Rhizomagastrodiae_C368-T04_good_119.390
SRR6049660Rhizomagastrodiae_C368-T01_good_120.770
SRR6049661Rhizomagastrodiae_C368-T04_good_120.380
SRR6049662Rhizomagastrodiae_C368-T01_good_118.630
SRR6049663Rhizomagastrodiae_C368-T01_good_118.540
SRR6049664Rhizomagastrodiae_C368-T10_good_119.560
SRR6049665Rhizomagastrodiae_C368-T10_good_119.560
SRP279888GastroGastrodia elata tuber 20.40
JuvenJuvenile tuber20.43
Mother_GastroMother tuber of Gastrodia elata 20.63
Mother_JuvenMother tuber of Juvenile 15.80