Gene detail

Detail information of GWHGAAEX011713/evm.TU.scaffold_4.13

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2169	4.00E-120	Zn-finger transcription factor
nr	gi\|672131023\|ref\|XP_008789064.1\|	0	PREDICTED: LOW QUALITY PROTEIN: E3 SUMO-protein ligase SIZ1 [Phoenix dactylifera]
Swissprot	tr\|Q6L4L4\|SIZ1_ORYSJ	0	E3 SUMO-protein ligase SIZ1
trEMBL	tr\|M0TXE7\|M0TXE7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P04380_001}
TAIR	AT5G60410	4.00E-120	DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	282556	326900	-

Transcript Sequence
>GWHTAAEX011713 CAGGAATGGCCACATATAAGCACCGCATACTGCCCAGCGAGGGCCGCGAGGAGGGAAAGCCGAAATGATTCAGACCTTGCGGCTACGGCGATCTTCGGGTCAAGAGGTGCGGAAAATTGCACTCCTCTCGCCGATAAAAGATAGAATAATAAGACGGAAAAAGAAGAGCAGAGGGAGCAAATCGATCTGTGGGAGCGATTATAGCGGGAATGGCAGGGAACTTCAATTAGAATTGGGTTTCTATAGTGAGGTTTCTTATCTTGACTGGAGTCATCTTTGGCCTCTACTGGCAGCTGGAGCGGCAATGGATTCGGGCACCAGTTGTAAGGACAAGCTGGTCTATTTCAGAATAAAGGAGCTTAAAGATGTTCTGGGGCAACTCGGCCTTCCAAAGCAAGGGAAAAAGCAGGATCTCATGGATAGAATATTATCAGTGCTTTCAGATGAACAAGTTGCAACGCATGATTTGGCCAAGAAAGTTTCATTTGGAAGAGATAGAATTGAAAAGATTGTTGATGATACTTACAGAAAAATGCAAATTACTGGTGCTAATGATTTAGCATCAAAAAACCATTGTATCTCAGATGTTAAATCTGCAAATCCACCGGAAGAAAGGGAGGATTCCAGTCACTTGGACATGAAAGTTCGTTGCCTTTGTGGGGGCACTTTAATCACTGAATCAATGATTCAGTGTGAGGATTCAAGATGCCAGGTTTGGCAGCATATTGGTTGTGTACTTATACCAGAGAAACCGATGGATGCTATCATACCTGAAATCCCTTCATCCTTCTATTGTGAGCTATGCCGGCTCAATAGGGCGGATCCGTTCTGGTTGACAGTAGCTCATCCTCTCCTGCCTGCCAAGCTAAATTCACCAGGCACAGCACCCGATGGGTCAAACCCACTACAGTCAGTGGACAGAACTTATCCGCTATCGAGAGCAGACAGAGAATTGTTACAGAGATCTGATTATGATCTACAGGTTTGGTGCATTTTATTGAATGATAAAGTTCAGTTTCGGATGCAATGGCCCCAGTATCCAGAGTTACTTGTCAATGGTGTCCAGATACGAACTATAAATAGGACACAATCACAGTTATTAGGGACAAATGGTCGAGATGATGGCCCAATAGTTACACTTTGCAGTAGGGAAGGAAGCAACAAAATTTGCTTATCTTTTAGTGATGCTCGAGTATTCTGTTTTGGTGTCAGGATTGCAAGGAGACGCACTGTCCAACAGGTACTTAGTTTGGTGCCAAAGGAAGTTTCTGGTGAGAGTTTTGAAGATGCCCTTGCCAGAGTTCGCCGCTGTATTGGTGGTGGAGCTGTTGCCAAAAATGCAGATAGTGACAGTGACTTGGAAGTTGTTGCTGATACTGTCCCTATCAACCTCCGTTGTCCTATGAGTGGATCTAGAATGAAGACAGCTGGTAGGTTCAAGCCTTGCATTCACATGGGCTGCTTCGATCTAGAAACTTTTGTTGAACTTACTCAGCGTTCTCGGAAGTGGCAATGCCCGCATTGTCTCAAAAATTATTCTTTGGAAAACATGATTATTGATCCATATTTCAATCGTATAACATCCCTGATGCAAAATTGTGGGGAGGATGTCAGCGAAATTGTCGTAAAGCCTGACGGATCTTGGCGCGCAAAAATCTCGGGCGACATCAAGGATCTCCTGCAGTGGCATTTGCCAGATGGCACTCTCTGCAGTGTGCCCGATCTTGAAGTAAAATCCCATGTGGATGTGTGCCCTCAGATTAAAAAGGAGATTATTTCGGAAGGATACACTGGCTTGAAGCTAGGCATCAGGAAAAACAACAATGGCGACTGGGTATTCAGTAAGCCCGGAGTTACAGAGTATCATCAGTCTTCGGGAACACTGGCATTGGACAGATCAGCCGATTTCTGCCAAAACTTAATCCCCACTAGCAGCAGTGCCACTGGGAGCTGCAGGGATGGTGAAGATCCCAGCGTCAACCAGGACGGCGGTGGAAGTGGCTTCGATCTACAGTTCAACAGCCACGAGCTAGACTCTATTTCCTTGGACCTGTACAGAGTGGGCGACGTGTGCCCTTCGGAACCTGTTGAAAATGATCACAATATAATCATTCTCAGCGACTCTGACGAAGATAATGTCACCATGATTTCTCCTCCCATTTTTTCTGAGTCGAACGTTGTTCCACCCGACCTCACATCAACATACCCCAATGAATCTGGACTGAGGGCTGAAACAGTCTCGTACCTCGGTTTCTGCGACAACAACACCAATGATTTCGGAATGCCCCTTTGGCCTCTGCATACGTGCCCTCAAAATGGTCCTGGCCTTAAGCTGTTTGGTTCGGATGATGTTCCCGACGCTTTTGCTGGGCTGGGATCGGATGACTACAGTCTGCAGCCAAATGGTTATGGGGAGGCTTGCCAGGCTGCAGCCCGGGGAGACCTTCCGCCCTGCCCTGAAAACAGTTCTAACGCATGTTTGATGAACAGCAGCACCCCTTTAACAACATACAACTGCGGAGACCAGTCGCTGCAAATCTTCTTACCCAGCCAGCCTGTAGCCAGCGCTCCGTCCCAAACTGATTTAAGTGGCCGTGACGAGATGGATAACAACATTGGACCCGACGACTGGATGTCTCTCAGCCTCGGCGGCACTGTGGTCGAACCGCACACGAATTCCGCTTCGGAGCAGCGTTTCACGCCCGATGAGAACAGGATGGAGTCGCTAGCCACTGCCTCCTTGCTACTGAGTATGAGCGGAGAGAGGCCCAACAAGTCGAGTCTCAATGGTGAAAGATCGAGCATTTCGTTCTGTCATCCTCGCCAGCCGCGGTCGGTCCGCAAGCGCCCCTTCCAGTCTATAAACTTGGACTCTGACTCTGATTAGCTGACGAACGAATGCTCTCAAACCTATTTCCCATCCTCCCGGTAAGGCCTGCGGCCTAATTAGCTGCCTCCCATCAACGTTCCCTGCCTTTGTTTTGTGCGCCTGCTTTTTAAAGGATTGTTGGAGACGGCTAAAGCTCGGAGATAGAGTTAGTGAGAAAGCAAGAGCTAGCCGTCGGCTGCCGCAGACATATCCAAGACAAGCCTCCCTGATAGGAATTCTGTGTTGATTTTACAATTTTTAATCAAAAGCTCAGTTTACCCTTCAAGACAAGCCCCCCCAACCCCCTGAAATTAGTTTATATATTGTTTCGATTTATTTGAATGTAAATTTTTGCAGTTATCTTTTCTTAAAGCTGGCATGGAGAAATGATGTGCTGTTATTGTGACGAAAAGAAAAGAAAAACTATTATTTGGCTATTTTGGCCGTGCTATTGTTTAGCTTTACCCGGAAATGGCATCACATTAGTGATGAGCAATGAATTTATTCGCTTTTGCTTGTGCTAATTAATTTAGAGTTCAGATACATGGCTTCCAATAATATTTCAAATAATTTTACAA

Network for GWHGAAEX011713

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02037.26	SAP	94	122	1.80E-07
PF02891.19	zf-MIZ	441	489	1.00E-16

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	39.540
SRP064423	SRR2545915	Juvenile tuber	18.760
SRP108465	SRR5643513	five period of Gastrodia elata	20.370
	SRR5643514	five period of Gastrodia elata	16.740
	SRR5643515	five period of Gastrodia elata	17.960
	SRR5643524	five period of Gastrodia elata	19.660
	SRR5643525	five period of Gastrodia elata	38.330
	SRR5643528	five period of Gastrodia elata	38.240
	SRR5643658	five period of Gastrodia elata	36.330
	SRR5643659	five period of Gastrodia elata	19.250
	SRR5643660	five period of Gastrodia elata	22.320
	SRR5643661	five period of Gastrodia elata	20.630
	SRR5643662	five period of Gastrodia elata	25.540
	SRR5643663	five period of Gastrodia elata	24.160
	SRR5643664	five period of Gastrodia elata	27.880
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.810
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.750
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	53.900
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.170
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.880
SRP279888	Gastro	Gastrodia elata tuber	26.21
	Juven	Juvenile tuber	29.40
	Mother_Gastro	Mother tuber of Gastrodia elata	46.04
	Mother_Juven	Mother tuber of Juvenile	55.61