Gene detail

Detail information of GWHGAAEX011722/evm.TU.scaffold_4.23

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672114353\|ref\|XP_008776614.1\|	5.85E-76	PREDICTED: CASP-like protein RCOM_0464280 [Phoenix dactylifera]
Swissprot	tr\|B9HTK2\|CSPLI_POPTR	3.00E-65	CASP-like protein 4C2
trEMBL	tr\|A0A067FJW8\|A0A067FJW8_CITSI	5.00E-75	CASP-like protein {ECO:0000256\|RuleBase:RU361233}
TAIR	AT3G55390	5.00E-61	Uncharacterised protein family (UPF0497)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	417415	419674	+

Transcript Sequence
>GWHTAAEX011722 CAAAAATAACTTTTATTTATATTTTGGAGGGGAAAGTTAATGTTTGCAGCTGGTGCGGCAAAAGAGGTAAAGCGGCCGTAGTTGTCACCGGCGGTAATCGTTAAAAGAAACCACAAGCATTAAATAACGAGGCACCTTCTTTAACCTAACCACTTACCCGCCGGACATCGACGGCCCCACCGCGCTGAACCCAACACCTTACTTGCGTGTTCTTCCCCCAAAAAACGTCACCTTTTCAACCCCCCCCCCATCCAATTCGAACCAAAACCCTCAGCTTTATTCTACCCTTTTTTTTAATCATCTTGTATTTTTCTATTTCTCTTTTCCTTCCTGCGAAGCACGGATAGATAGATTAGAGGGGAGGAATAAATTCACTCATATGTATGTATGAACAAAGAAAGCTCCATCTGTTCCTTTACTGTCCAATCCTTCTTCCTCCTCCTTTTCTCACGCGGATAGCGATGTGAGAAAAGGAGGTTTCTCGTGACTCCACCGACGATCTCTTGAGATCAAAGAAAAAAATCGTTCTTTGCACCCGCAGCAAACCAAAAGCTGAAAGCTTCTCCTTTTTTATTCACATGAGTCCTCTCCCACCACGCCGTGGACGATGCCATCTCCTCTCCGAAACGGTGACCTCCGGTCACCAGCCGTCGTGCACCGGCAGCTGCCATTCCAGTCGACTGTTTCTGAACACAAGCTCCGGCGGATCAACGCGCTTATCCTTCTCCTCCGGTCTGCCGCATTCTGCTTCTCGCTTGCAGCCACAGTGTTCACTGCCACGAACTCATCACGATCGCAGGGCTCTCCTTCGTGGCTCGACTTCCCCAGCTTCCGCTTCGTCCTCGCAGCCAACTCGATGGTTTGCATCTACTGTCTCTTCGAGATGGGCGCTTCGATCTGGGAGATCCTGAAAGGTGACACCTTTCTTCCTGAGCCGGTGCAGCTCTGGTTCGATTTCAGCCACGATCAGGTGTTTGCGTATATGCTGCTTGCGGCACAGGCAGCGGGAACAGGGGAGGCAAGGAAGTTGCACAGCGGAGGTGCGTGCGGCGCAGCCGGCGCCTTCTGCGTGCAGGCTTACATCTCCGTAGCATTGGGCTTTGGAGCTTTCGCGTTCCTCGCGCTCTCTTCGCTTCTCTCCGGCTTCAGAGTCACGTGCTTCGTCATCACGGGCTCGCGATTCCACCTCTAAAATATGAAACTTTGAGGAAAGATCCAACCTTTAGCGATCTCCACTTTTCGGGCACGCTCTCCTCTTTTTGCTTCCGATCGAGCTGGGGAGAGCGTGTTCTTCGAAAAGCGCCTCTTTTTCTTTCTTTCTCTTTCTTTTTTTGAAAAGAAAAGGTTCAGTTTTTTTTTTTTCTTTCTATATATTGTGTAAACGCAGAGTACTTGCTTGCTGATTTTTAGTATTGGATTACGCTTTCGTAAACCTGTTTGAAGATCTAACGATTTGTTGAAGTGAATGATTGGAATTGGCTCTGTTGTATCGGAGATGGATGCTAGTTATAATCCTGAGGTTTGGATTTGGATCTCTGCGGAAATGAAGCAGATTCAAATGATGATTGTTTGTATGATCCTCGACGTCATCGCCTGTGTTGTTTTCATCTTCTTCTTTTTTGTCTTCTTCTTAGTCCTCGTCAATCTGCACAGCTGCAATTTTCCCTTTTTTGGCTCTCTAAGGAACGTCTTCAAGCCGGCTAATGTGTTCAACTTTCTTCATCGGCTCTCAAACGTTGTTTATTCACTGTATATTTTAATCTATAATTTGTAATTGGAATATTCCGCCATCATCCGATGTCATCACCATTACGGACGAGAACGAGGAGGTTGCTGAAGGCGAGAAACAATGGGTAAACCGTTTAGTCGGCTTTAGCCTTGGAAAACGCATACATATAAGCTCTATTAGATACTATGCAAAAATCTTGGAAGCTTAAGAAATCATTTTTTTCTGTTTGATGAAGATGTGCAGTTCATCATGCAGGAGGTCCGTGGTTTTTCTTTAATACGCCAATTATAGTGAAATCTTGGACGAATGACTTCCTTCCCTCGGCTTGGGTAGTGCTGTGGGAACTTTGATCTTGGCTGACTTACTAACTATAAGTCAGTCTCCCTTAACTTTTCTTGTGTATGTGTTAAAATCACAACTTCATCATCTTTGCCAATATATTGTTTAAGGGGC

Network for GWHGAAEX011722

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04535.11	DUF588	34	170	9.00E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.200
SRP064423	SRR2545915	Juvenile tuber	14.890
SRP108465	SRR5643513	five period of Gastrodia elata	31.370
	SRR5643514	five period of Gastrodia elata	24.760
	SRR5643515	five period of Gastrodia elata	30.990
	SRR5643524	five period of Gastrodia elata	30.730
	SRR5643525	five period of Gastrodia elata	28.780
	SRR5643528	five period of Gastrodia elata	56.810
	SRR5643658	five period of Gastrodia elata	27.310
	SRR5643659	five period of Gastrodia elata	26.570
	SRR5643660	five period of Gastrodia elata	26.120
	SRR5643661	five period of Gastrodia elata	27.370
	SRR5643662	five period of Gastrodia elata	28.630
	SRR5643663	five period of Gastrodia elata	29.510
	SRR5643664	five period of Gastrodia elata	48.120
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	35.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.220
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.840
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	52.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	50.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	48.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.340
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	39.770
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	32.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	32.470
SRP279888	Gastro	Gastrodia elata tuber	23.74
	Juven	Juvenile tuber	41.41
	Mother_Gastro	Mother tuber of Gastrodia elata	112.11
	Mother_Juven	Mother tuber of Juvenile	85.37