Detail information of GWHGAAEX011730/evm.TU.scaffold_4.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|152990027|ref|YP_001355749.1| | 5.00E-08 | RNA-binding protein RNP-1 [Nitratiruptor sp. SB155-2] |
| KOG | KOG0118 | 1.00E-69 | FOG: RRM domain |
| nr | gi|743842080|ref|XP_010937706.1| | 2.62E-119 | PREDICTED: protein gar2 [Elaeis guineensis] |
| Swissprot | tr|P28644|ROC1_SPIOL | 2.00E-14 | 28 kDa ribonucleoprotein, chloroplastic |
| trEMBL | tr|M0RV50|M0RV50_MUSAM | 2.00E-114 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P24700_001} |
| TAIR | AT3G55340 | 1.00E-69 | phragmoplastin interacting protein 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 505049 | 540363 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011730
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 253 | 321 | 2.40E-12 |
| PF00076.21 | RRM_1 | 349 | 416 | 1.30E-09 |
| PF00098.22 | zf-CCHC | 452 | 468 | 3.60E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.540 |
| SRR2545915 | Juvenile tuber | 21.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 27.250 |
| SRR5643514 | five period of Gastrodia elata | 23.320 | |
| SRR5643515 | five period of Gastrodia elata | 27.700 | |
| SRR5643524 | five period of Gastrodia elata | 28.320 | |
| SRR5643525 | five period of Gastrodia elata | 40.840 | |
| SRR5643528 | five period of Gastrodia elata | 45.800 | |
| SRR5643658 | five period of Gastrodia elata | 29.690 | |
| SRR5643659 | five period of Gastrodia elata | 25.560 | |
| SRR5643660 | five period of Gastrodia elata | 24.930 | |
| SRR5643661 | five period of Gastrodia elata | 29.540 | |
| SRR5643662 | five period of Gastrodia elata | 28.650 | |
| SRR5643663 | five period of Gastrodia elata | 21.660 | |
| SRR5643664 | five period of Gastrodia elata | 22.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.830 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 27.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.050 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 28.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.370 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 26.700 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 30.350 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 32.730 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.850 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.850 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.14 |
| Juven | Juvenile tuber | 25.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 58.32 | |
| Mother_Juven | Mother tuber of Juvenile | 37.78 |