Detail information of GWHGAAEX011734/evm.TU.scaffold_4.36


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17441.00E-75Histone H2B
nrgi|672110380|ref|XP_008795023.1|9.26E-78PREDICTED: histone H2B.11-like [Phoenix dactylifera]
Swissprottr|Q9SI96|H2B3_ARATH3.00E-76Histone H2B.3
trEMBLtr|B9HV34|B9HV34_POPTR2.00E-76Histone H2B {ECO:0000256|RuleBase:RU000451}
TAIRAT2G287201.00E-75Histone superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000011659873660776+
Transcript Sequence

Network for GWHGAAEX011734

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.23Histone11281.30E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0003677Molecular FunctionDNA binding
GO:0000786Cellular Componentnucleosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms288.660
SRR2545915Juvenile tuber315.770
SRP108465SRR5643513five period of Gastrodia elata613.140
SRR5643514five period of Gastrodia elata755.380
SRR5643515five period of Gastrodia elata545.160
SRR5643524five period of Gastrodia elata650.940
SRR5643525five period of Gastrodia elata499.730
SRR5643528five period of Gastrodia elata405.010
SRR5643658five period of Gastrodia elata357.490
SRR5643659five period of Gastrodia elata336.640
SRR5643660five period of Gastrodia elata341.190
SRR5643661five period of Gastrodia elata279.810
SRR5643662five period of Gastrodia elata345.540
SRR5643663five period of Gastrodia elata311.950
SRR5643664five period of Gastrodia elata266.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1422.450
SRR6049655Rhizomagastrodiae_C368-T10_good_1559.200
SRR6049656Rhizomagastrodiae_C368-T07_good_1665.710
SRR6049657Rhizomagastrodiae_C368-T07_good_1416.160
SRR6049658Rhizomagastrodiae_C368-T04_good_1395.500
SRR6049659Rhizomagastrodiae_C368-T04_good_1349.670
SRR6049660Rhizomagastrodiae_C368-T01_good_1465.570
SRR6049661Rhizomagastrodiae_C368-T04_good_1501.150
SRR6049662Rhizomagastrodiae_C368-T01_good_1755.580
SRR6049663Rhizomagastrodiae_C368-T01_good_1555.630
SRR6049664Rhizomagastrodiae_C368-T10_good_1777.230
SRR6049665Rhizomagastrodiae_C368-T10_good_1777.230
SRP279888GastroGastrodia elata tuber 320.98
JuvenJuvenile tuber328.44
Mother_GastroMother tuber of Gastrodia elata 400.26
Mother_JuvenMother tuber of Juvenile 177.56