Gene detail

Detail information of GWHGAAEX011743/evm.TU.scaffold_4.46

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0446	Vacuolar sorting protein VPS1, dynamin, and related proteins
nr	gi\|743827200\|ref\|XP_010933528.1\|	PREDICTED: dynamin-related protein 1E isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9FNX5\|DRP1E_ARATH	Dynamin-related protein 1E
trEMBL	tr\|M0S912\|M0S912_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P18210_001}
TAIR	AT3G60190	DYNAMIN-like 1E

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	1062221	1080424	+

Transcript Sequence
>GWHTAAEX011743 ATTAAGCATTCGATAAAAAATATTTTTAATTTTTATTTTTACACATAAATATTATTCTTTCAATAATTTACTTAATATTGAATTAATTAACGAAATTTGGCCCTCTTCGCCTTCGGCCTGAAACGCTTTCTTCCCCTTTCTAGTAACCCAGGTCGTCTTCCTCCGGATCAGCGCTTAGGTTTCCGCTTATCGGAGATGTCGACAATGGAGAGCTTGATTGGTATGGTGAACCGGATACAGAGGGCATGTACGGTTCTCGGAGACCACGGAGGTGCCGATAGCGCTTTGCCGACTCTCTGGGAGGCTCTTCCGTCCGTCGCCGTCGTGGGAGGTCAGAGTTCGGGAAAGTCGTCGGTCCTGGAGAGCATCGTTGGGCGGGATTTTCTTCCTCGTGGATCCGGGATTGTGACAAGGCGACCGTTGGTGCTACAACTGCATAAGACGGACGATGGGAAGCAGGAGTATGCTGAGTTTCTTCATATGCCCAAGAGAAGATTCACTGATTTTAGCCTTGTCCGCAAGGAAATTGCAGATGAAACTGACAGAATAACTGGGAAAACTAAACAAATTTCTCCTATTCCAATCCAGCTTAGTATTTACTCTGCTAATGTTGTTAATCTAACACTTATTGATCTTCCTGGTCTAACAAAGGTTGCTGTAGAGGGACAATCTGACAGTATTGTTCAGGATATAGAAAACATGGTTCGTTCATATGTTGAGAAGCCCAACAGTATTATACTAGCTATATCCCCTGCCAACCAAGATATTGCAACATCTGATGCCATTAAGCTTGCCAGGGAAGTGGACCCTTCGGGTGAAAGGACATTTGGAGTTCTGACCAAGCTTGATCTAATGGATAAAGGAACAAATGCTCTTGATGTCCTAGAAGGAAGATCTTACAAGCTGCAGCATCCTTGGGTTGGAATTGTTAATCGTTCACAGGCAGATATAAACAAGAATATTGACATGATAGTTGCCAGACAAAAAGAAATGGAATATTTTGCATCTAGTCCCGACTATTCTCATTTAGCTAGTAAAATGGGCTCTGAATATCTTGCCAAACTTCTTTCAAAGCATTTGGAGTCTGTAATCCGAGCTCGAATTCCAAGCATTACATCTTTGATAAATAAGACTGTTGAAGAGCTTGAAGCGGAGATGAATCATCTTGGCAGACCTATTGCTATCGATGCAGGGGCTCAGCTATACACAATATTGGAGCTTTGTCGTGCATTTGACAAGATATTCAAAGAGCACCTGGATGGCGGGCGTGCTGGCGGCGATAGAATCTACGGAGTTTTTGACAATCAGCTTCCCGCCGCTCTGAAGAAGCTCCCATTCGACAGGCATCTTTCACTTCAAAATGTAAGGAAAGTGGTGTCGGAGGCGGATGGGTATCAGCCACATCTGATTGCTCCTGAGCAAGGCTACCGTCGCCTCATCGAAGGCTCTCTCAATTTCTTTCGAGGCCCCGCCGAAGCGTCTGTGGAAGCCGTCCACTTGGTTATGAAGGAACTGGTTAGAAAATCAATTGGAGAGACTCAGGAACTGAGAAGATTTCCAACTCTTCAGTCGGAATTAGCGGCGGCTTCCTATCAAGCGCTGGAAAGATTCCGGGAAGACAGCAAGAAGACGGTGATGCGTCTCGTCGACATGGAGGCGGCCTATCTGACCGTCGACTTCTTCCGGAACCTTCCGCATGAGGCAGAGATTGGAGGCAATCCTTCCAACAACCCCGCCTCTGCAAAGGGCGGATCCAATCCCGCTGCTGCCGCCGCGGCGGCGGCGGCGGCGGCGGATAGATATTCGGACGGGCATTTTAGGAGGATTGCGACGAATGTTTCTGCCTATGTGGTGATGGTATCGGAGACGCTTCGGCTCTCCATCCCCAAAGCCGCCGTCCATTGCCAAGTCAGGGAGGCTAAGCGATCCTTGCTCAATCATTTCTACGCTCAAGTCGGGGGGAAAGAGAGCAAGCAGCTCGGACAACTTCTTGATGAGGACCCTGCGTTAATGGAGCGGAGAGTGCAGTGTGCAAAGAGATTGGAACTCTACAAGTCTGCCAGGGACGAGATTGAAGCTGTTTCTTGGGCCAGATGAGCTTTATATATATATATATATATGAGAATTAAATATTCATTTTATATGTGAAAAAATGAAACTTTTGGCTTTAGGAGGCCTCTGAAGGCCGAAGCATCTTTTTTTATGAAAATTTGTGAATCTTTTGATTCCCACGTTTATAATATTCTTAAACTTCTTTTTCCAAAATTTTTTTTTAGAAAACTAAAATTATTAAACTTTTCTTACTCGTTTTATCATATTTTTTTTCTGCAAGTTTTTTTTGAC

Network for GWHGAAEX011743

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00350.22	Dynamin_N	41	216	1.50E-54
PF01031.19	Dynamin_M	226	493	5.50E-63
PF02212.17	GED	538	629	9.40E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003924	Molecular Function	GTPase activity
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	261.300
SRP064423	SRR2545915	Juvenile tuber	310.540
SRP108465	SRR5643513	five period of Gastrodia elata	118.530
	SRR5643514	five period of Gastrodia elata	92.550
	SRR5643515	five period of Gastrodia elata	98.800
	SRR5643524	five period of Gastrodia elata	96.720
	SRR5643525	five period of Gastrodia elata	87.950
	SRR5643528	five period of Gastrodia elata	72.900
	SRR5643658	five period of Gastrodia elata	102.240
	SRR5643659	five period of Gastrodia elata	162.930
	SRR5643660	five period of Gastrodia elata	178.860
	SRR5643661	five period of Gastrodia elata	163.760
	SRR5643662	five period of Gastrodia elata	166.500
	SRR5643663	five period of Gastrodia elata	177.590
	SRR5643664	five period of Gastrodia elata	217.550
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	258.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	182.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	228.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	317.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	398.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	476.810
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	328.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	358.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	203.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	294.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	159.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	159.430
SRP279888	Gastro	Gastrodia elata tuber	338.82
	Juven	Juvenile tuber	182.17
	Mother_Gastro	Mother tuber of Gastrodia elata	137.69
	Mother_Juven	Mother tuber of Juvenile	183.27