Detail information of GWHGAAEX011748/evm.TU.scaffold_4.51
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|32475430|ref|NP_868424.1| | 1.00E-36 | uridylate kinase [Rhodopirellula baltica SH 1] |
| KOG | KOG3079 | 3.00E-92 | Uridylate kinase/adenylate kinase |
| nr | gi|672126410|ref|XP_008786654.1| | 7.13E-114 | PREDICTED: UMP-CMP kinase 3-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q7XI40|KCY3_ORYSJ | 1.00E-111 | Probable UMP/CMP kinase 3 |
| trEMBL | tr|I3SIG7|I3SIG7_LOTJA | 6.00E-111 | UMP-CMP kinase {ECO:0000256|HAMAP-Rule:MF_03172} |
| TAIR | AT3G60180 | 3.00E-92 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 1113438 | 1122034 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011748
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00406.21 | ADK | 31 | 183 | 9.90E-49 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13800 | CMPK1, UMPK | Metabolic pathways | map01100 |
| Pyrimidine metabolism | map00240 | ||
| Drug metabolism - other enzymes | map00983 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006207 | Biological Process | 'de novo' pyrimidine nucleobase biosynthetic process |
| GO:0006139 | Biological Process | nucleobase-containing compound metabolic process |
| GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process |
| GO:0009041 | Molecular Function | uridylate kinase activity |
| GO:0004127 | Molecular Function | cytidylate kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0019205 | Molecular Function | nucleobase-containing compound kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 58.100 |
| SRR2545915 | Juvenile tuber | 78.100 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 44.730 |
| SRR5643514 | five period of Gastrodia elata | 49.110 | |
| SRR5643515 | five period of Gastrodia elata | 49.380 | |
| SRR5643524 | five period of Gastrodia elata | 47.370 | |
| SRR5643525 | five period of Gastrodia elata | 97.840 | |
| SRR5643528 | five period of Gastrodia elata | 81.340 | |
| SRR5643658 | five period of Gastrodia elata | 89.720 | |
| SRR5643659 | five period of Gastrodia elata | 43.270 | |
| SRR5643660 | five period of Gastrodia elata | 35.660 | |
| SRR5643661 | five period of Gastrodia elata | 37.320 | |
| SRR5643662 | five period of Gastrodia elata | 48.790 | |
| SRR5643663 | five period of Gastrodia elata | 39.610 | |
| SRR5643664 | five period of Gastrodia elata | 37.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 59.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 60.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 55.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 58.190 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 68.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 70.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 64.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 65.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 52.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 62.890 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 67.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 67.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 63.80 |
| Juven | Juvenile tuber | 61.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 111.59 | |
| Mother_Juven | Mother tuber of Juvenile | 115.76 |