Gene detail

Detail information of GWHGAAEX011754/evm.TU.scaffold_4.57

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|186685368\|ref\|YP_001868564.1\|	8.00E-52	hypothetical protein Npun_F5300 [Nostoc punctiforme PCC 73102]
KOG	KOG0319	0	WD40-repeat-containing subunit of the 18S rRNA processing complex
nr	gi\|672117508\|ref\|XP_008781943.1\|	0	PREDICTED: transducin beta-like protein 3 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	2.00E-22	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|B9S245\|B9S245_RICCO	0	U3 small nucleolar RNA-associated protein, putative {ECO:0000313\|EMBL:EEF42388.1}
TAIR	AT5G16750	0	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	1174254	1232513	-

Transcript Sequence
>GWHTAAEX011754 ATGGCGGCGCCACCATCGCTAATCCTAAAGAAGAACTACAGGTGCTCTCGGTTCTTGCAGAAATTCTACAGCGGCGGAGCCTATGTTGTTGCCTCCGACGGCGCCTTCATCGCCTGCGCATGTACCGATGAGATTAAGATCATCGAAGCTTCTACTTCTTATGTGCGGGAAACCCTAGAGGGCGATGGAGAGGTAGTAACTGCTCTAACTCTCAGCCCGGATGATGGGTTCCTCTTCTCGGCGAGTCACAGTCGGTTGATCCGTGTGTGGGACCTTTCTTCATTCAAATGCATACGTTCTTGGAAGCTGTTTTCAGGAAGTGATGATGAAAGTGTTCTGGTTTGGAATCTTGAAAGCAAGAAGCGCATTGCAGCATTAAAGGAAAGTGATACATCACGTGTTTCTTCTTTGGCTATTTCGAACGATGGAAGGAGTTTGCTTATCTCAGAAAGAGGGGGTGTTGTTACTATATGGAACTTGCAAAAATATAACCGGGAACTGACAATAACTATTAAGGAGAAGGATAATCTATGTGAAACAGTTAACACAGTTTGCTTCATTCCTGATGGAAGTTTAATATCCACTTGTTTGAGCCAATGCAAGTCTCCAAATAAGGAAAAGAAGCTTGCTACCCAGCCAATCTATTTTTTAACAGTTGGTGAAGATGGGATTATACGTATATGGTCCTATTTATTTAAGAGTAGTGCAGTCTGCATCTACAAGCAGAGATCTTCTGATGTATCACCCGGATCTGCTAAATCTGGAGTGGGGTTTGTATCAGCGCTCGTACTGCCTCTGAATCAAGGACTGCTCTGTATCACCGCTGATGGACAATTTCTTTTTTATCACCCAGAAAAATCTTCAGTTGGAACCTTCCAGTTAAGTCTGTATAGAAGGCTGATTGGTTATAATGAACAGATACTTGATATGGTATTTCTTGGCGAGGAGGAACAATACCTCGGTGTGGCTACAAATTCAGAGCAGTTGCAAGTTTATGATCTAGAATCTATGTCATGCGCATATGTCTTAACTGGGCACGCTGCTGTTATATTGAGTCTGGACTCATGCAAGATGAGTTCTGGAAGGACACTTATTGTAACGGGAAGCAAGGACCATCATGTTAGACTTTGGGATGCTGAAAGAAGATGTTGTGTGGGAATCGGCAAGGGCCATATGGGAGATGTTGGAGCAGTTGTCTTTTCAAAGAAGTGTAAAAACTTTTTTGTTAGCGGTAGTAGTGATCGTACTATTAAAGTATGGAACTTTGATGGTATTTCTGAAGATGTAAATCTAGAGAGCGTTCTGAAATCAAAAGCTGTTGTGGCTGCACATGATAAGGACATAAATTGTCTTGCTATTTCACCTATTGACAGTCTTGTTTGTAGTGGCTCTGAGGATCGAACTGCTTGTATATGGAGGCTTCCTGAACTTGTATCAGTGATGGTCTTGAAAGGACATAAGAGAGGAATCTTTTCCGTTGAGTTTTCTCCTGTTGATCAATGCGTTATGACGTCCTCTGGTGATAGAACAATTAAAATTTGGGCGATTTCTGATGGTACATGTTTGAAATCATTTGAAGGCCATACTGCTGGTGTTTCTCGTGCTTTGTTCCTTACACGTGGGACCCAATTTGTTTCTTGTGGTTTTGATGGCTTGGTCAAGTTGTGGACGATTAAGTCAAACGAGTGCATTTCTACTTATGATCAGCATGATGAAAGAATTTGGGCATTGTCAATTGGAAAGAGTTCTGAAATGTTTGCTACTGGAGGTGAAGATGCAATTATTAATCTGTGGCGTGACAGTACTTCTGCAGACAAGGAGGAGAATTTCCGAAAGGAAGGGGAAGCAATTCTTAGAGGCCAAGAACTCGAAAATGCTATTTCAGATGCTGATTATGCTAAGGCAATTCGACTGGCATTTGAGCTGAGGAGACCACACAAGCTTTTTGAATTGTTCTCTCAACTTTGCAGGAGGGATGCTGCTGCTGGTCCCATTGAAAAATCTCTTCAAAATCTCGGGAAGGATGAGCTTCGCATTCTGTTCGAGTACGTTCGGGAGTGGAACACCAAACCCAAGCTGTGCCATGTCGCCAACTTTGTGCTTTTCCGAGTGCTCAGGATGATCCCACCAACGGAAATCATGGAGATAAAAGGAATCGGCGAAATTCTGGAAGGGCTCGTTCCTTACTCTCGGAGGCACTTCAGCAGAGTTGACAGGCTCGTGCGGAGCAGCTTCTTGCTGGATTACATCTTGAATGGAATGTCAGCCATAGAGCCTGAGACTGTTTCAGCAGCACAAGAGCAGCAGCTCAGTGAGACATCTGTGCTCACCTCAGATAATGCTGTTATTAATGAAGAAGAAAGGAGGTCCTCAAAGAAGAGGAAAGGGAACAAATCCACAAAGAAAGCCAAAGACAGCTCAATGAAAGGTTAG

Network for GWHGAAEX011754

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	59	91	0.067
PF00400.31	WD40	338	378	4.80E-05
PF00400.31	WD40	383	421	0.00023
PF00400.31	WD40	441	472	0.00012
PF00400.31	WD40	480	514	0.00012
PF00400.31	WD40	519	556	0.0022
PF00400.31	WD40	562	598	0.029
PF08625.10	Utp13	621	754	8.30E-43

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14555	UTP13, TBL3	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0006364	Biological Process	rRNA processing
GO:0005515	Molecular Function	protein binding
GO:0032040	Cellular Component	small-subunit processome

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	203.560
SRP064423	SRR2545915	Juvenile tuber	239.990
SRP108465	SRR5643513	five period of Gastrodia elata	70.310
	SRR5643514	five period of Gastrodia elata	59.130
	SRR5643515	five period of Gastrodia elata	51.870
	SRR5643524	five period of Gastrodia elata	56.270
	SRR5643525	five period of Gastrodia elata	31.250
	SRR5643528	five period of Gastrodia elata	18.610
	SRR5643658	five period of Gastrodia elata	25.110
	SRR5643659	five period of Gastrodia elata	96.470
	SRR5643660	five period of Gastrodia elata	97.880
	SRR5643661	five period of Gastrodia elata	88.860
	SRR5643662	five period of Gastrodia elata	82.380
	SRR5643663	five period of Gastrodia elata	91.130
	SRR5643664	five period of Gastrodia elata	99.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	122.360
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	67.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	88.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	127.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	103.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	111.430
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	102.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	100.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	81.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	91.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	78.850
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	78.850
SRP279888	Gastro	Gastrodia elata tuber	91.83
	Juven	Juvenile tuber	108.23
	Mother_Gastro	Mother tuber of Gastrodia elata	20.59
	Mother_Juven	Mother tuber of Juvenile	44.95