Gene detail

Detail information of GWHGAAEX011755/evm.TU.scaffold_4.59

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2229	Protein required for actin cytoskeleton organization and cell cycle progression
nr	gi\|743813879\|ref\|XP_010929853.1\|	PREDICTED: protein SDA1 homolog isoform X1 [Elaeis guineensis]
trEMBL	tr\|F6GVJ3\|F6GVJ3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44012.1}
TAIR	AT1G13160	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	1278976	1307310	+

Transcript Sequence
>GWHTAAEX011755 ATGGGCAGTAAAGGCCGCATACCACTTAATATGCGCAAGTCCCTTCCAGGTCCCGGAATGTTCCATCCAGAGCCTTTTGGTCAAGGGGCTCGTCCGCCACTTAGTGCATTGCCCCATGACTTGATGCCTCCATCGCCGCGAATCGGATTTTTACCGTCGGAAATGGCAGCAACTGCCCGGAAATCCCTTTCTGCCTCCGGCGCAGCTGCAGAGAGGCTGAGCCTGCCGCTGCTTCAATCGAGGATGAAGCTAGACCCGGAAGGATATGAGACGGAGCTGCTCCTCATCTACCGCCACTTCGAATCCACCCTTCATCTCTTTCGCCAACAATCCGCGCTAAGCCCATCGTCGGATCCGGTTATGTCCAAGGATCTTGGCGATCTCGCAATGTTCCTGGCGCATATGATCCCTTTCTATCCCCTTCGATTAGCAGAATTCCCTCGCCAAATTTCAGATATTCTTCGAACCGACGCACGGACGCTTCCATCTTCCCTCCGCTGTCATCTGGCCCAAGCCATCATTCTTCTTGTTAACAAAAAGATTGTTGATTTAGAGATGCTGCTCGAGTTGTTCATGGACCTTCAAATTATCGGTGATCGAACATTGCGAAAGCTTGTTTTCTTACATATTGTTCATAACATTCGGCACATGAATAAAAAACATAGAAATGAAGGAAAGAATCAGAGATTGCAGAATATTCTTTTCAAGCAACTGCAGGGAGAGGACGAACATAGGGCGAGGAGATCACTTGTTGTTCTCTGTGATCTTCATCGCAGAAAGGTGTGGTTTGATGATCGCACAGCTAATGCCATCTGTAATGCCTGCTTTCACAGCTCTCCTAGGGTTATGATTGCTGCTATTTCTTTCTTGCTTGGTTTTGAAAGCATTGAAGATGATGGTGACGAAAGTGAAGCCTCAAGTTCTGAGGACAATGAAACTAATCAAAATCCACATGTTGTTCTTAGCAGGGAGGATGTTTATAAGGCACAACACAAGGGCACAGCTTCTAGCAAAAGAAAAAAGAAAGCAAAATTGCAGCGTGTCATTCGTAGCATGAAAAGACAGCAGCGTCGTTCATCAGAAAAGAGTGACTCAAATTCTTATTCTCCTCTAAATCATTTAAAAGATGCACAGGGTTTTGTTGAGAATCTTTTCTCTCGTCTACATACCTGCAGTGAGAGATTTGAGGTTCGAATGATGATGTTGAAAGTAATTGCAAGAACTATTGGGCTGCATTGTCTCATCTTGCTAAACTTTTATCCGTTCCTTCAAAGATATGTTCAGCCTCATCAGCGTGATGTGACAAATTTACTTGCTGCAGGAATACAAGCATGTCATGAAAAGGTGCCTCCTGATGCAGTGGAACCACTATTCAGGCAAATTGTGAACCAATTTGTGCATGATCGTTCCCGTCCTGAGGCAATCACTGTTGGATTGAATGTAGTGCGAGAGATGTGCCTGAGGATGCCTCTGTTAATGAATGAAGACTTGCTTCAAGATTTGGTTCTATACAAGAAATCACATGAGAAACCTGTTTCAGTTGCTGCACGATCCTTGATCACTCTATTTAGAGAGATATGCCCTTCTTTATTGGTCAAAAAAGACCGTGGCCGACCCATTGATCCTAAAGCTCGTCCAAAAGCTTTTGGAGAAGTTAGTGTATCCAGTGATGTGTCCGGTATAGAGTTACTTCAACATGAGGATGATCAAATCGCCAATTGTTCTGATGATACTGACAATGAATTGAATGCGACTACTTGTGAATTTGATGAAGAGGATGATTCTGAAGAAGATACCGCTTCTGCAAAAGATGGTGTTGGAAATCTTAGTGATGATAATGATGATTTTGAAGATGGTGATGGAAATCCCAGTGATGATAATGACAGTGATGATGAAGGTTTGGAGAATGAGAATATGACTGATGGCTGTGATTACGATGAACTGGAAGAAGACCTAAAAACACAGCTGTCATCTGCTGATGAGTATGATGATGGTGATGACGATGATACTGATAGTGGTGATGATGGCAGAAACAGTGATGTTGAAAAAGTTGAAGATGAGCCAAAGTCAAAGAAGAGGAAGCTAATTGATTATGCTGGTGGTTTGAGTACTGCAGATGCAAGTCTACGAACTCTGAAAAGACTAGCGGGAATCAAAATTGCTAAAGCTTCAACTGATGGAGCTGATGGGTTTCTTTCTAATGAAGATTTCCAGCGTATCAAAGAGCTCAAGGCAAGACTGGAAGCAAAGCAGGCCTTATCACAACATGGGCTTTTGAAAAAGGATGCAAACTCTGCATCCACTGGTTTCAGGATTCCGTCTTCTGAGCAGCTGTGCACCAAACGCTTGGATCCATCTAAACTTGAAGCACACATCAAGAGTAAGCTTAGCAAGGAAGAGAGATTAGTCTTGGTTCGTGCAGGAAGAGAAGACAGAGGACAGTTCAAGGCCCGAGCTGCTGTGAAACAGAAAAAGAGCGGCGGGCTCAGTAATCGGCAGAAGCAGCACAAGAAAGCGATGCCGCTTGCCGCCAAAAGAGACAGAGCGGCTCGGTCCCGGCAGGAGAAGAAGAGGCGGCAGAAGCACTCAGGGAAGCAGTTCAAGGGAAGGAAAGCATGGAAGTGAGCCCCTTCTGTATCTTTTAATTTATTGTTTGAAGGAAGCTTTGGCCTTATAAAGTATATGGATTTGAACCTTTGACTTATCAATGATTCAAATTCAAGAGCTGAGCCTGAGCCACTTCATTCACCTGTGGAGTTTTCCTGTCAATTTTGTCTTGTTAATTTTTATTTATATTATTTTGTTATCTTGGATTTTTATAAATAAAGTTTTTCTTGGAATGGCGGTGCAAAATTTCCAAGAGGATTGTAATTTTTTTCTTTTTTTACCAAATGAATATTTTGAGCAGGTTTTGGCTGAGTTTCTCTTTCTTATACTATAATATTTATAACTAACAAGGAATCTTGCTCTGA

Network for GWHGAAEX011755

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08158.11	NUC130_3NT	131	182	8.90E-15
PF05285.11	SDA1	493	871	1.90E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	56.860
SRP064423	SRR2545915	Juvenile tuber	66.780
SRP108465	SRR5643513	five period of Gastrodia elata	40.260
	SRR5643514	five period of Gastrodia elata	32.450
	SRR5643515	five period of Gastrodia elata	29.470
	SRR5643524	five period of Gastrodia elata	29.720
	SRR5643525	five period of Gastrodia elata	26.390
	SRR5643528	five period of Gastrodia elata	26.050
	SRR5643658	five period of Gastrodia elata	28.520
	SRR5643659	five period of Gastrodia elata	43.510
	SRR5643660	five period of Gastrodia elata	44.110
	SRR5643661	five period of Gastrodia elata	72.460
	SRR5643662	five period of Gastrodia elata	42.220
	SRR5643663	five period of Gastrodia elata	45.210
	SRR5643664	five period of Gastrodia elata	45.560
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	67.150
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	60.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	63.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	60.230
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.870
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	48.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.630
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	37.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.780
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.780
SRP279888	Gastro	Gastrodia elata tuber	50.03
	Juven	Juvenile tuber	55.36
	Mother_Gastro	Mother tuber of Gastrodia elata	18.70
	Mother_Juven	Mother tuber of Juvenile	29.77