Detail information of GWHGAAEX011757/evm.TU.scaffold_4.61
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|108762272|ref|YP_629357.1| | 1.00E-116 | ABC transporter permease [Myxococcus xanthus DK 1622] |
| KOG | KOG0055 | 0 | Multidrug/pheromone exporter, ABC superfamily |
| nr | gi|672160661|ref|XP_008800115.1| | 0 | PREDICTED: ABC transporter B family member 2-like [Phoenix dactylifera] |
| Swissprot | tr|Q8LPK2|AB2B_ARATH | 0 | ABC transporter B family member 2 (Precursor) |
| trEMBL | tr|Q8GU75|Q8GU75_ORYSJ | 0 | Os02g0693700 protein {ECO:0000313|EMBL:BAF09717.1} |
| TAIR | AT4G25960 | 0 | P-glycoprotein 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 1312070 | 1321300 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011757
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00664.22 | ABC_membrane | 54 | 322 | 9.70E-45 |
| PF00005.26 | ABC_tran | 393 | 541 | 1.70E-33 |
| PF00664.22 | ABC_membrane | 690 | 962 | 1.30E-42 |
| PF00005.26 | ABC_tran | 1028 | 1176 | 2.00E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05658 | ABCB1, CD243 | ABC transporters | map02010 |
| Bile secretion | map04976 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0042626 | Molecular Function | ATPase activity, coupled to transmembrane movement of substances |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0016887 | Molecular Function | ATPase activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.880 |
| SRR2545915 | Juvenile tuber | 9.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.620 |
| SRR5643514 | five period of Gastrodia elata | 13.130 | |
| SRR5643515 | five period of Gastrodia elata | 22.300 | |
| SRR5643524 | five period of Gastrodia elata | 22.510 | |
| SRR5643525 | five period of Gastrodia elata | 20.860 | |
| SRR5643528 | five period of Gastrodia elata | 22.290 | |
| SRR5643658 | five period of Gastrodia elata | 7.670 | |
| SRR5643659 | five period of Gastrodia elata | 12.040 | |
| SRR5643660 | five period of Gastrodia elata | 10.930 | |
| SRR5643661 | five period of Gastrodia elata | 9.380 | |
| SRR5643662 | five period of Gastrodia elata | 9.730 | |
| SRR5643663 | five period of Gastrodia elata | 9.320 | |
| SRR5643664 | five period of Gastrodia elata | 8.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.610 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.140 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.680 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 28.270 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 35.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.28 |
| Juven | Juvenile tuber | 11.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 82.98 | |
| Mother_Juven | Mother tuber of Juvenile | 112.52 |