Detail information of GWHGAAEX011759/evm.TU.scaffold_4.63


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG18140Predicted E3 ubiquitin ligase
nrgi|743879837|ref|XP_010908490.1|0PREDICTED: E3 ubiquitin-protein ligase RNF14 [Elaeis guineensis]
Swissprottr|Q9SKC3|ARI9_ARATH2.00E-17Probable E3 ubiquitin-protein ligase ARI9
trEMBLtr|M0SYD0|M0SYD0_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P14010_001}
TAIRAT1G323400NDR1/HIN1-like 8

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001113542071417000+
Transcript Sequence

Network for GWHGAAEX011759

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05773.21RWD862274.90E-19
PF00097.24zf-C3HC42873233.50E-05
PF01485.20IBR3554131.00E-10
PF01485.20IBR4544981.40E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms48.410
SRR2545915Juvenile tuber22.940
SRP108465SRR5643513five period of Gastrodia elata27.200
SRR5643514five period of Gastrodia elata34.040
SRR5643515five period of Gastrodia elata29.940
SRR5643524five period of Gastrodia elata32.680
SRR5643525five period of Gastrodia elata51.240
SRR5643528five period of Gastrodia elata46.590
SRR5643658five period of Gastrodia elata47.720
SRR5643659five period of Gastrodia elata35.610
SRR5643660five period of Gastrodia elata33.230
SRR5643661five period of Gastrodia elata29.940
SRR5643662five period of Gastrodia elata31.080
SRR5643663five period of Gastrodia elata32.990
SRR5643664five period of Gastrodia elata30.440
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_136.020
SRR6049655Rhizomagastrodiae_C368-T10_good_137.210
SRR6049656Rhizomagastrodiae_C368-T07_good_135.430
SRR6049657Rhizomagastrodiae_C368-T07_good_143.620
SRR6049658Rhizomagastrodiae_C368-T04_good_146.400
SRR6049659Rhizomagastrodiae_C368-T04_good_154.790
SRR6049660Rhizomagastrodiae_C368-T01_good_138.630
SRR6049661Rhizomagastrodiae_C368-T04_good_139.330
SRR6049662Rhizomagastrodiae_C368-T01_good_135.240
SRR6049663Rhizomagastrodiae_C368-T01_good_133.990
SRR6049664Rhizomagastrodiae_C368-T10_good_141.420
SRR6049665Rhizomagastrodiae_C368-T10_good_141.420
SRP279888GastroGastrodia elata tuber 44.58
JuvenJuvenile tuber41.23
Mother_GastroMother tuber of Gastrodia elata 55.79
Mother_JuvenMother tuber of Juvenile 40.89