Gene detail

Detail information of GWHGAAEX011763/evm.TU.scaffold_4.69

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|193213356\|ref\|YP_001999309.1\|	3.00E-28	phosphoribosylglycinamide formyltransferase [Chlorobaculum parvum NCIB 8327]
KOG	KOG3076	9.00E-55	5'-phosphoribosylglycinamide formyltransferase
nr	gi\|743838721\|ref\|XP_010936789.1\|	8.95E-73	PREDICTED: phosphoribosylglycinamide formyltransferase, chloroplastic isoform X1 [Elaeis guineensis]
Swissprot	tr\|P52423\|PUR3_VIGUN	5.00E-64	Phosphoribosylglycinamide formyltransferase, chloroplastic (Precursor)
trEMBL	tr\|D7TZ11\|D7TZ11_VITVI	2.00E-68	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI35737.3}
TAIR	AT1G31220	9.00E-55	Formyl transferase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	1524350	1546603	+

Transcript Sequence
>GWHTAAEX011763 ATCTTAATAACTTTTCAATTGACATTCAACCAAACAGCCCCCCGTAAATTGAAAATTATTTCAGATAATGTCAACAGTAAAAAAAGATTTGTAAATTAAAAATAAAATTATAAGCTGCAGGGCACGAGGTGGTTTTGATTCCACACATTTTTGGGGGTTCAGTCTTGTTGTTAATATTAGCAATTCAATTGATCAGCATCATAACTTTATCCTCTGCATTGATTTTGTTTTAGGGTTTCTCTGGCATTATAATTTCAGTATGTATCTTCTAAATTATTTGATGCGATCAAAATTGATATATTTTGTAGGTATTTGGTTTTTGTAATGGATGCAGTGGGATCGACTTTAGGTAATCGAGTCCCTTCCAACAAAGTATTGATTGGTTTTTTGCAAAGTGCTCACTCCGCATTACTTGGGTCTGTCAAGTCTCAAAGAGTAGATTTTGGCAAATTTTTGTCTTATGAAAAGGCCAAATTGAGAAAACAAGGTAGAGCAATAGAAGTTTTGCAGTGCAGAAATAGCCTTCACGATTCTGGCACTTCCTTTGAAGAAAAGTGCGGGCTTGGCAAGTATATAAGAAAAAATATAGCAATTTTTGTTTCTGGTGGTGGATCAAATTTTCGTTCCATTCATAATGCTTCTATCAGTGGAGTAATTCATGGAGATGTTGTGGTTCTTGTCACTGATAAGCCTGGCTGTGGTGGTGCTGTATACGCAAAGGATCACAGCATTCCTATCATTCAATTCCCTAAACTTAGAGATTCTCTTGAGGGGTTGTCGCCAATGGACCTCGTTATTTCCTTAAGGAAATTGAAGGTTCATTTTATTCTCTTGGCTGGCTTCTTGAAATTAATCCCTATTGAATTAGTTCTGGCATTTCCGAGGTCCATATTAAATATTCATCCTTCTCTTCTGCCAGCCTTTGGGGGTAAAGGATATTATGGGCTAAAGGTGCATAAAGCTGTCGTTGCTTCGGGGGCCAGGAGACAAGAGCCTCCTCAGCTCCCATTGGGATCCATTACCAAGTATAGTGCAATACAATGCAAAACGACATCACACATAGTAGCATTTTGGAACCAAACAGTAGCTGCTGCTCTGCTCATAGAAAAACTCTGATGCTTAATATATTATCAGTGTTCTCCATGAAGCTAAATAAGGCCTAAGAAAAACATGATATTCTGGACCGACTGTTCATTTTGTAGATGAACACTACGATTCTGGTCGAATCATAGCGCAAAAGATTGTCCCAGTTTTAGTAAATGATACTGCAGAACAACTTGCATCAAGAGTTCTTCACGAGGAACACCAGCTGTATGTAGAGGTAGTGTCTGCACTATGTGAGGAAAGAATTGTTTGGAGGGAAGATGGAGTTCCTCTTATCCGGAGCAGGAAGAATCTAGATGAGTATAGTTAATGCCTTTTTCTAATATCCTTTGGTGTAATGCAGAGAATTGCCCTTTCTGCAATATATGCTTCTCTTTTTTCTATTAAAAATTGTAGTTCAAAGCAATTGAGGACAAGCATTAAGCAGTAGGTTTTTTATTTAATTTTGAATTCAGTCCTGTTGAGATTTTCTTAATGATTTTGACAGTTTATGTATCTAACTATAAATACATTTTAGTTCTGAGAATTAAAATATCTATTGATAGAAACTTATTGTAAAATTGCACTAATGCATTATATGCTGGATTGAATTCTCTGTAATACTGTTCCACAAGACTCAAGTAGTAACAATCATCTCCCAGTTATTGTTGAATTTTGGCTGAAATAATTTATTAACATCTATCATTTGCTGCAATA

Network for GWHGAAEX011763

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00551.18	Formyl_trans_N	86	220	2.00E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00601	E2.1.2.2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		Purine metabolism	map00230
		One carbon pool by folate	map00670

Gene Ontology

GO term	Ontology	Name
GO:0009058	Biological Process	biosynthetic process
GO:0016742	Molecular Function	hydroxymethyl-, formyl- and related transferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.560
SRP064423	SRR2545915	Juvenile tuber	6.300
SRP108465	SRR5643513	five period of Gastrodia elata	5.730
	SRR5643514	five period of Gastrodia elata	8.940
	SRR5643515	five period of Gastrodia elata	6.290
	SRR5643524	five period of Gastrodia elata	7.770
	SRR5643525	five period of Gastrodia elata	5.380
	SRR5643528	five period of Gastrodia elata	2.550
	SRR5643658	five period of Gastrodia elata	3.340
	SRR5643659	five period of Gastrodia elata	3.090
	SRR5643660	five period of Gastrodia elata	2.890
	SRR5643661	five period of Gastrodia elata	3.100
	SRR5643662	five period of Gastrodia elata	3.200
	SRR5643663	five period of Gastrodia elata	3.270
	SRR5643664	five period of Gastrodia elata	2.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.030
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.920
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.220
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.090
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.660
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.020
SRP279888	Gastro	Gastrodia elata tuber	5.58
	Juven	Juvenile tuber	5.13
	Mother_Gastro	Mother tuber of Gastrodia elata	7.39
	Mother_Juven	Mother tuber of Juvenile	8.27