Detail information of GWHGAAEX011766/evm.TU.scaffold_4.72


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743826905|ref|XP_010933436.1|2.04E-139PREDICTED: uncharacterized protein LOC105053830 [Elaeis guineensis]
trEMBLtr|M0U5V0|M0U5V0_MUSAM1.00E-130Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP02880_001}
TAIRAT4G177203.00E-103RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001115698801574749-
Transcript Sequence

Network for GWHGAAEX011766

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_120765.40E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms33.760
SRR2545915Juvenile tuber37.570
SRP108465SRR5643513five period of Gastrodia elata67.900
SRR5643514five period of Gastrodia elata67.840
SRR5643515five period of Gastrodia elata76.450
SRR5643524five period of Gastrodia elata66.490
SRR5643525five period of Gastrodia elata116.580
SRR5643528five period of Gastrodia elata122.770
SRR5643658five period of Gastrodia elata140.380
SRR5643659five period of Gastrodia elata81.510
SRR5643660five period of Gastrodia elata96.270
SRR5643661five period of Gastrodia elata94.800
SRR5643662five period of Gastrodia elata119.430
SRR5643663five period of Gastrodia elata101.610
SRR5643664five period of Gastrodia elata137.460
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_162.860
SRR6049655Rhizomagastrodiae_C368-T10_good_145.180
SRR6049656Rhizomagastrodiae_C368-T07_good_160.920
SRR6049657Rhizomagastrodiae_C368-T07_good_164.070
SRR6049658Rhizomagastrodiae_C368-T04_good_168.890
SRR6049659Rhizomagastrodiae_C368-T04_good_169.370
SRR6049660Rhizomagastrodiae_C368-T01_good_156.510
SRR6049661Rhizomagastrodiae_C368-T04_good_157.090
SRR6049662Rhizomagastrodiae_C368-T01_good_156.550
SRR6049663Rhizomagastrodiae_C368-T01_good_154.420
SRR6049664Rhizomagastrodiae_C368-T10_good_177.980
SRR6049665Rhizomagastrodiae_C368-T10_good_177.980
SRP279888GastroGastrodia elata tuber 117.96
JuvenJuvenile tuber90.57
Mother_GastroMother tuber of Gastrodia elata 166.35
Mother_JuvenMother tuber of Juvenile 114.32