Detail information of GWHGAAEX011769/evm.TU.scaffold_4.76


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|319778451|ref|YP_004129364.1|5.00E-84ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
KOGKOG03310ATP-dependent RNA helicase
nrgi|743779130|ref|XP_010920029.1|0PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 5 [Elaeis guineensis]
Swissprottr|Q6YS30|RH5_ORYSJ0DEAD-box ATP-dependent RNA helicase 5
trEMBLtr|M0RPV0|M0RPV0_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P06200_001}
TAIRAT1G319700DEA(D/H)-box RNA helicase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001116548621684780+
Transcript Sequence

Network for GWHGAAEX011769

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.28DEAD1803492.70E-49
PF00271.30Helicase_C3895004.60E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms242.920
SRR2545915Juvenile tuber235.940
SRP108465SRR5643513five period of Gastrodia elata111.420
SRR5643514five period of Gastrodia elata89.930
SRR5643515five period of Gastrodia elata90.840
SRR5643524five period of Gastrodia elata82.920
SRR5643525five period of Gastrodia elata92.050
SRR5643528five period of Gastrodia elata51.210
SRR5643658five period of Gastrodia elata70.310
SRR5643659five period of Gastrodia elata149.910
SRR5643660five period of Gastrodia elata181.680
SRR5643661five period of Gastrodia elata159.310
SRR5643662five period of Gastrodia elata143.590
SRR5643663five period of Gastrodia elata130.010
SRR5643664five period of Gastrodia elata155.930
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1135.460
SRR6049655Rhizomagastrodiae_C368-T10_good_1132.900
SRR6049656Rhizomagastrodiae_C368-T07_good_1133.090
SRR6049657Rhizomagastrodiae_C368-T07_good_1155.690
SRR6049658Rhizomagastrodiae_C368-T04_good_1151.660
SRR6049659Rhizomagastrodiae_C368-T04_good_1172.490
SRR6049660Rhizomagastrodiae_C368-T01_good_1165.590
SRR6049661Rhizomagastrodiae_C368-T04_good_1148.070
SRR6049662Rhizomagastrodiae_C368-T01_good_1116.060
SRR6049663Rhizomagastrodiae_C368-T01_good_1146.680
SRR6049664Rhizomagastrodiae_C368-T10_good_1101.360
SRR6049665Rhizomagastrodiae_C368-T10_good_1101.360
SRP279888GastroGastrodia elata tuber 184.14
JuvenJuvenile tuber177.56
Mother_GastroMother tuber of Gastrodia elata 54.76
Mother_JuvenMother tuber of Juvenile 93.11