Gene detail

Detail information of GWHGAAEX011770/evm.TU.scaffold_4.77

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	2.00E-166	FOG: PPR repeat
nr	gi\|743847836\|ref\|XP_010939201.1\|	0	PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Elaeis guineensis]
Swissprot	tr\|Q9FME4\|PP438_ARATH	6.00E-167	Pentatricopeptide repeat-containing protein PNM1, mitochondrial (Precursor)
trEMBL	tr\|M0S5L4\|M0S5L4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P06230_001}
TAIR	AT5G60960	2.00E-166	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	1697649	1702395	-

Transcript Sequence
>GWHTAAEX011770 TCAGTTCTTTTAGGGTTTGCCTGCAGCTTAAGCCCTCTTCGGGGCATTTTGGGCGAAAAATGTGGAGGCCGTCGCCGGCGCGATCGCCGGGGCTCGCTCACTTCCTCTCTTCTTTCCCATTCTCTGCTCCTTTCACTCCGGTTCTTCGATCACTCTCCTCTTCCTTCACCTCCAACTCCTCGGATCTCGCTCGCACTATCTCCGACGCACTGACGAGCTTTGCGTCTTCCACGGATCGGTCCTCTCTCGATCTCCAGCGCCACTTCTCCCTTCACTTCTCCGACGTTCGCTTCAACACTTCTTTTTTTCTCGACATCCTCAACGCCTCTCCCTCCGCTGGTCGTATTGCCGTCGACTTTTTCCGCTGGCTTGTGCGCCACCGCGGATTTATGGTCAACGATACCTCTCTTTCCCATATAGTAACCTACCTCGGCCGGCGCTACGACTTCAAAGCCGTTCATGACGTGCTTCTCGAATATCAAAGCGCTGCCGGCCTCGAGTCCCTCTCTGCAGCCATCGATCGCTTCGTCCGCGCCGGCCGCGCTGCCCAGGCTGTCCACTTTTTCGACTGCTTGGAGCGCGATTACGGGATGAAGCCCGATCTGACGGCACTTACGGTCCTCGTCTCCTCTCTCTGCAGCAATGGGTTCGCCGGGCATGCTGAGCGAGCGGTCAAGCGCTTTGCGGATGCGATCTTTCCGAGTGAGCAGATCTGCTACGCTCTCATACGTGGATATAGTAATGAGTTGAAGCTCGAAGATGCTAAAAGGCTGATGGGGGAGATTATTCGAGGTGGTTTTGATCTTGGCACGCCGGCTTATAATTCCATCATAGATTGCGTTTGCCGCCTCTGCCGGAAGAAAAGTCCGCTCCTGCTGCTGCCGGAGGCACAGAAGCTTCTTCTCGAGATGGAAGCTACAGGGATTCCTCGTGATCAGGAGACTTTTTATGTGCTTATTTACAATTTGTGCAAGATAAGGAGAACTGGTGATGCAATGAAGCTATTCCAGGAGATGAGCCAATGGGGATGCTCTCCAGGAGCTGAGACCTACCTTGTTCTGATCCGGAGCTTGTACCAGGCTGCTAGGTTATCAGAAGCCGAAGAAATGGTTGGATTTATGAGGTCTGCTGGATTCGGGAAATCACTTGATAGGAAGGCTTACTATGGTTTCATCAAAATTTTGTGTGGGATTGAGAGGGTGGAACATGCCATGAAAGTATTTAAACAGATGAAGAGTAACGGGCATGCACCAGGGATTAAGACTTACGAATTACTGATAGGGAAGTGGGCAAGCCAGAATGAGGTTGACTTGGCCAATAGATTATTCAAGGAAGCTGTAGCCCGGGGTGTGCCTGTTGTTTCCAAGGAGTACAAGGTGGATCCAAGGTACGCAAAATCTAAGAAGAAGAAAGAAAAGAAGAAGGAAACTTTTGGAGAAAAATTGGCAAAGAAGAGAAAACGGCTGAAGAAGCTGAGGCTGAGTTTTGTTAAGAAACCAAGAGCCACAAGGAGACTTGTTTGAGCTTGATCAATGATGAATTACAGTGTTGGATGTGATAGAAAAGCAATGTGGAGCTTTGTTTGCTCGATCGATGATTTAAACTGCTCGCCATATCATCCCTCAAATTTATGATCTTTATTCAGCACCACATTCAAGGCAGTTGCCTGTTGGTGTTGAGGTTTCCTTTGCTTTTACTGTGAAGTTACACTTCTTGATCAGGTGTGGTTCTCCTTCATTTCAACTGCGGTTCTCTAACATTCGAAGAGTGGACAAAAGGTCCTGTTTTACTTGAACCAATATAAACTCTTATGTATCCGTATGTATGATTTGCTTTTCTATAATTCTTTGTGGTTTTTATTTTTCTTATTGGTGAGATAAAATGAATTATTAAAGTGTTTTATATTTTCTAAGAATTTATTAAGTCTTTTTTTTTTAGTCAAAACCTATTCATTTCACCTCTTGGCAGTGCCTGTTTTGCCTTCATAGGCCAATTGTCACCTTAATTGGCTATTAAGATTACTGTGATCTATGAA

Network for GWHGAAEX011770

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	221	247	0.13
PF13041.5	PPR_2	299	338	6.20E-08
PF13812.5	PPR_3	382	408	0.01

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.270
SRP064423	SRR2545915	Juvenile tuber	23.850
SRP108465	SRR5643513	five period of Gastrodia elata	22.440
	SRR5643514	five period of Gastrodia elata	23.030
	SRR5643515	five period of Gastrodia elata	23.270
	SRR5643524	five period of Gastrodia elata	22.940
	SRR5643525	five period of Gastrodia elata	21.470
	SRR5643528	five period of Gastrodia elata	20.760
	SRR5643658	five period of Gastrodia elata	23.810
	SRR5643659	five period of Gastrodia elata	31.700
	SRR5643660	five period of Gastrodia elata	34.400
	SRR5643661	five period of Gastrodia elata	31.520
	SRR5643662	five period of Gastrodia elata	35.600
	SRR5643663	five period of Gastrodia elata	28.820
	SRR5643664	five period of Gastrodia elata	31.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.510
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	37.980
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.820
SRP279888	Gastro	Gastrodia elata tuber	51.34
	Juven	Juvenile tuber	52.01
	Mother_Gastro	Mother tuber of Gastrodia elata	26.32
	Mother_Juven	Mother tuber of Juvenile	41.45