Detail information of GWHGAAEX011774/evm.TU.scaffold_4.82
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0823 | 1.00E-23 | Predicted E3 ubiquitin ligase |
| nr | gi|695077452|ref|XP_009386066.1| | 6.62E-31 | PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like isoform X2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P93030|RMA2_ARATH | 4.00E-24 | E3 ubiquitin-protein ligase RMA2 |
| trEMBL | tr|M0U6T8|M0U6T8_MUSAM | 2.00E-31 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP06270_001} |
| TAIR | AT4G28270 | 1.00E-23 | RING membrane-anchor 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 1730978 | 1731538 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011774
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00097.24 | zf-C3HC4 | 41 | 81 | 6.50E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
| Ubiquitin Family | U-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10666 | RNF5 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.980 |
| SRR2545915 | Juvenile tuber | 6.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 59.140 |
| SRR5643514 | five period of Gastrodia elata | 75.840 | |
| SRR5643515 | five period of Gastrodia elata | 155.090 | |
| SRR5643524 | five period of Gastrodia elata | 88.690 | |
| SRR5643525 | five period of Gastrodia elata | 49.120 | |
| SRR5643528 | five period of Gastrodia elata | 53.910 | |
| SRR5643658 | five period of Gastrodia elata | 44.150 | |
| SRR5643659 | five period of Gastrodia elata | 99.590 | |
| SRR5643660 | five period of Gastrodia elata | 61.280 | |
| SRR5643661 | five period of Gastrodia elata | 64.220 | |
| SRR5643662 | five period of Gastrodia elata | 39.310 | |
| SRR5643663 | five period of Gastrodia elata | 26.230 | |
| SRR5643664 | five period of Gastrodia elata | 24.510 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 67.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 138.890 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 58.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 64.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 89.020 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 116.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 111.500 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 70.490 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 94.780 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 133.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 85.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 85.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.74 |
| Juven | Juvenile tuber | 32.97 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 273.80 | |
| Mother_Juven | Mother tuber of Juvenile | 262.64 |