Gene detail

Detail information of GWHGAAEX011777/evm.TU.scaffold_4.86

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2330	Splicing factor 3b, subunit 2
nr	gi\|720080547\|ref\|XP_010242002.1\|	PREDICTED: splicing factor 3B subunit 2-like [Nelumbo nucifera]
trEMBL	tr\|A0A067GKJ9\|A0A067GKJ9_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO75861.1}
TAIR	AT4G21660	proline-rich spliceosome-associated (PSP) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	1886226	1897301	+

Transcript Sequence
>GWHTAAEX011777 GAAAGCCGAAAGCCGATAGTGTTTCGGTTTAGGGCTATCGCATTTGTTGTAAGAACTTGAATCCTCTCACTGCTTCTCTTCATCGTCTATCAAATCCTTCGCGAAACCATGGCCGTGCCGGAATCCACTACTGAAGCGGCGTTCAATGCCGGCGGCGGAATCATGAAACCAGATCCGTTTAGCAATGGCGGATCCGTGACCAACAAGAAGAACGCCCGCGAGAACGACCGACGGCGCCGCCGCAGGAAACAGAAGAAGAACAAGCCCCCTGCCGCTGATGGCGAGAAGGTAGAAGCTAGAGGAGTCGATGATGACCATTACGATGATGATAAGGAGAACTCTGATCCTCGTCACGAGGTCGATGTTTCGGTAGAGATAGAGTACGTCCCGGAGAAGGTAAATTTGGAGGATACGTTGGTCGAGGAGTTTAAGATCGTGTTTGAGAAATTCAGCTTCAGTGATTCTGCTGTTGGAGAGGACGCTGACAAGAAGGATGAGTCAGCTGCTAATTCCGAGTCTAAGAAAAAGGACTCTGATTCAGAGGATGAACCTGATACTCAACAGAAGGAGAAGGGGCTCTCAAATAAGAAGAAAAAGCTTCAAAGGAGGATGAAAATTGCTGAACTGAAGCAGATATGCACAAGGCCTGATGTAGTTGAGGTATGGGATGCCACAGCATCTGATCCAAAGTTACTTGTGTATCTGAAGTCATATCGGAACACTGTACCTGTACCACGACATTGGTGTCAAAAGCGGAAATTCTTACAGGGCAAGCGTGGTATAGAGAAGCAGCCATTTCAACTGCCTGATTTCATTGCTGCAACTGGAATAGAAAAGATACGACAGGCGTACATTGAGAAAGAGGACAGCAAGAAATTGAAACAAAAGCAGCGTGAACGCATGCAGCCTAAGATGGGAAAGATGGACATCGATTATCAGGTTCTTCATGACGCTTTTTTCAAATACCAAACTAAACCAAAACTTACAACCCATGGTGATCTCTATCATGAAGGAAAGGAATTTGAGGTCAAGCTGAGGGAAATGAAGCCCGGGATTCTGTCTCATGAGTTGAAAGAAGCCCTTGGCATGCCGGAGGGCGCCCCGCCACCATGGCTCATCAATATGCAGAGATATGGTCCTCCACCATCGTACCCTCAATTAAAAATACAAGGATTGAACGCCCCCATTCCGTCTGGCGCCAGTTTCGGCTACCATCCTGGTGGCTGGGGAAAACCCCCTGTCGATGAATTTGGCCGACCGTTGTATGGAGATGTTTTTGGGGTTCAGCAGCAAGATCAACCCAATTATGAGGAAGAACCTGTGGACCGATCCAAGCACTGGGGGGATTTGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAGATTGAGGAAGAGGAAATGGAAGCTGGGATCCAATCAGTTGATAGCCTTTCAAGCACTCCTACGGGTGTGGAGACTCCTGATGTGATCGATCTTCGCAAGCAGCAAAGGAAAGAACCAGAGAAGGAGAAGCCTCTGTACCAGGTTCTGGAAGAGAAGGAAGAGAGAATTGCTCCTGGGACTTTGCTTGGGACAACCCACACATATGTACTCGGTGCCCAACAAGAGAAACCTGGTGCTAAAAGGGTGGATCTTCTTCGTGGCCAGAAATCAGACAAAGTGGACGTCACCATACAGCCGGAGGAGCTGGAGGCAATGAATGATGTCTTGGCTGCCAAGTATGAGGAAGCGAGAGAGGAGGAGAAACTCAGGAACCAGAAAGAGGACTTCAGTGACATGGTTGCTGAGGCTGAGAAAAAGAGAAAGCGCAAAATGCAGGATAAAGAAGGAAAATCCAAGAAGAGGGATTTTAAGTTCTGACTTTTTTTTTTTTTTTTTTTT

Network for GWHGAAEX011777

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04037.12	DUF382	179	304	3.10E-59
PF04046.15	PSP	313	358	1.10E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12829	SF3B2, SAP145, CUS1	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	47.070
SRP064423	SRR2545915	Juvenile tuber	40.900
SRP108465	SRR5643513	five period of Gastrodia elata	60.100
	SRR5643514	five period of Gastrodia elata	56.990
	SRR5643515	five period of Gastrodia elata	51.430
	SRR5643524	five period of Gastrodia elata	56.970
	SRR5643525	five period of Gastrodia elata	57.950
	SRR5643528	five period of Gastrodia elata	49.080
	SRR5643658	five period of Gastrodia elata	52.630
	SRR5643659	five period of Gastrodia elata	62.110
	SRR5643660	five period of Gastrodia elata	58.450
	SRR5643661	five period of Gastrodia elata	61.920
	SRR5643662	five period of Gastrodia elata	55.400
	SRR5643663	five period of Gastrodia elata	60.470
	SRR5643664	five period of Gastrodia elata	59.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	55.560
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	72.070
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	59.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	64.670
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	85.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	79.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	62.590
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	74.050
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	67.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	65.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	66.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	66.430
SRP279888	Gastro	Gastrodia elata tuber	112.08
	Juven	Juvenile tuber	112.84
	Mother_Gastro	Mother tuber of Gastrodia elata	109.08
	Mother_Juven	Mother tuber of Juvenile	126.04