Gene detail

Detail information of GWHGAAEX011778/evm.TU.scaffold_4.87

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|83312232\|ref\|YP_422496.1\|	elongation factor G [Magnetospirillum magneticum AMB-1]
KOG	KOG0465	Mitochondrial elongation factor
nr	gi\|672145839\|ref\|XP_008796850.1\|	PREDICTED: elongation factor G-2, chloroplastic isoform X1 [Phoenix dactylifera]
Swissprot	tr\|I1K0K6\|EFGC2_SOYBN	Elongation factor G-2, chloroplastic (Precursor)
trEMBL	tr\|A0A068UNS2\|A0A068UNS2_COFCA	Coffea canephora
TAIR	AT1G62750	Translation elongation factor EFG/EF2 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	1898105	1908947	-

Transcript Sequence
>GWHTAAEX011778 AAAAGCTCATTGAGAGCAAGAGGGGGAAAGGAAAATGGCGGGGGAAACCATAATGGCAGCGTCATTAGCTTCCTCTTGCGTCTTACACAGCTCGCACGGCTCGCGGAGTTTCCTACCTCTCTCTTCTCGTCGCCTTCTTGCGCACAACTGCTTCCTCGCCGCCGGACTCACACGGGGCGCTGCCTCCGATTTGTTTGATGGCATTCGCACGAAGTGTTGGACGACTGTTCATCGATATCATGGGAAAAATAAGAAGTTTGTGTTCACGGCTATGGTTCATGATGATTCAAAGCGAACTGTGCCTCTTGAGGACTACCGAAATATTGGTATAATGGCTCACATAGATGCTGGAAAAACTACAACTACAGAACGCATTCTATATTATACTGGAAAAAATTATAAGATTGGGGAGGTTCATGAGGGAACAGCCACTATGGACTGGATGGAGCAGGAACAAGAAAGAGGCATCACCATCACTTCTGCTGCGACGACTGCTTATTGGAACAATCATAGAATAAATATAATTGATACTCCTGGTCATGTTGATTTCACACTAGAAGTGGAGCGTGCTCTCCGGGTGTTAGATGGAGCAATTTGTTTATTTGATAGTGTTGCAGGTGTGGAACCGCAGTCAGAAACTGTATGGAGGCAGGCTGATAAATATGGAGTTCCCAGAATATGTTTCATTAATAAGATGGATCGTCTTGGGGCTAATTTTTTCAGAACATGTGATATGATAGTCACAAACTTGGGTGCTAAACCACTTATTTTGCAATTACCAGTTGGTGTAGAAGATACTTTTAGTGGAGTTGTTGATATAGTAAAAATGAAGTCTGTAGTTTGGACAGGAGAAGATTTAGGTGCAAAGTTTTCTTATAAAAATATACCAGAAGATCTCCAAAAGTTAGCCCAGAGTTATAGAATTCGACTAATTGAGACTATAGTTGAATTAGATGATGCGGCCATGGAGAAGTATTTGGAAGGAATTGAACCAGATGTGCAGACTATAAAAATTTTGATTAGGAAAGGAACCATTTCCGGTGCTTTTGTTCCTGTTTTATGTGGCTCAGCATTCAAAAATAAGGGAGTTCAATTGTTGCTTGATGCTGTGATAGATTACTTGCCTTCACCAATTGACCTGCCACCGACCAACGGTTCTGTTCCAGATGACCCAAAAAAAATCCTTGAATGCTTCCCTAGTGATGATGAGCCATTTGCTGGGTTGGCCTTCAAGATCATGAACGATCCCTTTGTTGGATCTCTCACATTTGTTAGAGTATACTCGGGGAAACTGTCGGCAGGTTCATTTGTTTTTAATTCAAACAAGCAAAGGAGAGAGAGAATAGGACGGCTTTTAGAGATGCATGCCAATAGCAGGGAGGATGTCAAATTAGCATTGACAGGTGATATTATAGCTCTCGTTGGTCTAAAAGATACTGTCACAGGGGAAACACTTTGTGACCTGGAAAAACCTCTTGTGCTTGAACGGATGGATTTTCCAGACCCTGTCATTAAGATTGCAATCGAACCCAAGACAAAGGCTGATCTTGATAAGATGACTGCTGGGCTTATTAAGTTGGCTCAAGAAGACCCTTCTTTTCATTTCTCGAGAGATGGGGAGACCAACCAAACTGTAATTGAAGGAATGGGAGAGCTCCATCTTGAGATTATTGTTGATCGGTTGAAGAGGGAATATAAGGCTGAGGCAAATGTAGGTGCGCCTCAAGTAAATTATCGTGAAAGTATATCTAAGGTATCACAGGTGCAATATGTACACAAGAAACAGACTGGTGGCCAAGGCCAATTTGCCGATATCACTATGAGGTTTGAGCCTTTAAAGCCTGGGAGTGGTTATGAATTCAAGAGTGAGATAAGGGGTGGTGCAGTTCCAAAGGAATACATTCCTGGAGTGATGAAAGGTTTAGAAGACTGCATGAGCAATGGTGTGCTTGCGGGCTACCCTGTTGTTGATGTTCGAGCTGTTTTAGTAGACGGGACATATCATGATGTTGATTCTAGTGTCTTGGCATTTCAACTGGCAGCGAGAGGTGCTTTCCGAGAAGGACTCAAGAAAGCTTCTCCAAGAATACTTGAGCCTATCATGAAAATTGAAGTTGTTACTCCTGAACAAAATTTGGGTGATGTCATTGGTGATTTGAACTCCAGAAGAGGCCAGATTAACAACTTTGGGGATAAACCCGGTGGGCTAAAGGTGGTTGATGCTTTGGTGCCGTTAGCTGAATTGTTCCAATACGTGAGTACCCTTAGAGGGATGACAAAAGGTCGTGCTTCCTATTCAATGCAGCTCTCAAATTTTGACATTGTTCCTCAACACATACAGAACCAGCTCTGCTCCAAAGAACAAGTTCCAGCGTGATTTCCAGTATTATTATTGCAGGTATTATTATGAGTGTATAGTTTAAAAAATAATGCATGAAAATGTTTTTCAAGTGCATGGCACGCAGTAAATCTGATGCAAAATGTTTATTTAGAGATTTAGAAATACCTCTTAGTTCTACACATTCAAAATTCACTGTTGAAACTAGGATAATTCAACATTTATGCGTTGTGTGCATTTGGTGAATGAACACACATTCTTGAATTACTTTTCTTGCATGTCTCGGGCATCCACCATTCTGCATTGTCATCATTGTTTTTATATGCTGCTGAAACCTCCCTCTTTTGGCGGTGCAATTTTCGCATTTTGTGGGGTTGTTTCTTACATGCTACAATGCAAAGCTTATCACAGTAATCATTACCACCATTACAGAAGAGGTGAATTTTCTTTAATTCATATGCATACCAGCAAGCAAAAAAATAAAATTCGCAATATCTAATTTACAGCCGATCAAACAGCTCTTTCAGATTGAAATACATTACCTTTACTTTTTATATTTTTATATGCAGTACAGACAAGATTTTGTAGGGCTTTTTCAAGCAACTAAATTTACATTTTTAGAAGAATTACTAAACATATGCATGAAAAAAATTTAGGCATGCAGAATGGTGTTTGCCATGTTTTTAATGCTCAGTTACTGAATTTTGTTTTTACGTGATAAGTTTGAGACTTTGTTAAGTGCCTTGAATTTGGCTTAAAACCTTTTAAGCTTATGTGCATTTTACTGAGAGAGTTCCCTGGAAATATTTCTTCTTTAGAACCTTAATCCATTTTTAAATGTGTTTAATCATATTTTCTCTGTAGTGAATTCAATCCTCATAATTTTTATTGTTTAAGAATTTTCATGTAAATTATTGTGCTTGTTTTCTCAAGGTTTATTCAGTATGCCCTCGCAAACTTGGTTTAGAACATTTGCTTAGAGTTTTGTTGAATTTCATCACAAATTTGATGACATAGATAAAGTATAACACGTTGAGAAGCATGATCAGTTTGCACTTTGGAAAGTGAAGATGATGGTGATAGTCTTCCAACTTGATTTGAACGGCACTTTGTTTGGGAATGACAGGATGCTTGTCATTCTCAAACATAGTGCCTGCTTGGAAAGCAGAATATTGTTTAGTTCAACTGATGTATATGTAGTTTTCTTTTTATTAGTTCAATTATCACATAGTGCCTGCTTGGAAAGCAAAATAGTGTTTAGTTCAACTGACAAAGGTAATACATATATTTGAATCTTTGAGTGTGCCC

Network for GWHGAAEX011778

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.26	GTP_EFTU	93	365	4.90E-69
PF03144.24	GTP_EFTU_D2	408	475	1.50E-13
PF14492.5	EFG_II	488	561	1.60E-31
PF03764.17	EFG_IV	563	682	1.40E-44
PF00679.23	EFG_C	684	771	9.50E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006414	Biological Process	translational elongation
GO:0003924	Molecular Function	GTPase activity
GO:0003746	Molecular Function	translation elongation factor activity
GO:0005525	Molecular Function	GTP binding
GO:0009507	Cellular Component	chloroplast

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.350
SRP064423	SRR2545915	Juvenile tuber	17.320
SRP108465	SRR5643513	five period of Gastrodia elata	9.240
	SRR5643514	five period of Gastrodia elata	8.960
	SRR5643515	five period of Gastrodia elata	7.690
	SRR5643524	five period of Gastrodia elata	7.270
	SRR5643525	five period of Gastrodia elata	22.910
	SRR5643528	five period of Gastrodia elata	21.470
	SRR5643658	five period of Gastrodia elata	22.650
	SRR5643659	five period of Gastrodia elata	13.280
	SRR5643660	five period of Gastrodia elata	15.700
	SRR5643661	five period of Gastrodia elata	15.960
	SRR5643662	five period of Gastrodia elata	18.670
	SRR5643663	five period of Gastrodia elata	17.020
	SRR5643664	five period of Gastrodia elata	21.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.100
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.630
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.050
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.430
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.010
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.010
SRP279888	Gastro	Gastrodia elata tuber	20.78
	Juven	Juvenile tuber	12.82
	Mother_Gastro	Mother tuber of Gastrodia elata	9.98
	Mother_Juven	Mother tuber of Juvenile	6.57