Detail information of GWHGAAEX011780/evm.TU.scaffold_4.90
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1761 | 8.00E-47 | Signal recognition particle, subunit Srp14 |
| nr | gi|695072461|ref|XP_009383351.1| | 5.72E-49 | PREDICTED: signal recognition particle 14 kDa protein [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O04421|SRP14_ARATH | 2.00E-47 | Signal recognition particle 14 kDa protein |
| trEMBL | tr|A0A059DAK3|A0A059DAK3_EUCGR | 2.00E-46 | Uncharacterized protein {ECO:0000313|EMBL:KCW87617.1} |
| TAIR | AT2G43640 | 8.00E-47 | Signal recognition particle, SRP9/SRP14 subunit |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 1941090 | 1951351 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011780
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02290.14 | SRP14 | 4 | 93 | 3.70E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03104 | SRP14 | Protein export | map03060 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006614 | Biological Process | SRP-dependent cotranslational protein targeting to membrane |
| GO:0008312 | Molecular Function | 7S RNA binding |
| GO:0030942 | Molecular Function | endoplasmic reticulum signal peptide binding |
| GO:0048500 | Cellular Component | signal recognition particle |
| GO:0005786 | Cellular Component | signal recognition particle, endoplasmic reticulum targeting |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 52.310 |
| SRR2545915 | Juvenile tuber | 62.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 58.830 |
| SRR5643514 | five period of Gastrodia elata | 73.430 | |
| SRR5643515 | five period of Gastrodia elata | 54.960 | |
| SRR5643524 | five period of Gastrodia elata | 74.230 | |
| SRR5643525 | five period of Gastrodia elata | 72.920 | |
| SRR5643528 | five period of Gastrodia elata | 95.370 | |
| SRR5643658 | five period of Gastrodia elata | 72.520 | |
| SRR5643659 | five period of Gastrodia elata | 70.120 | |
| SRR5643660 | five period of Gastrodia elata | 73.110 | |
| SRR5643661 | five period of Gastrodia elata | 70.120 | |
| SRR5643662 | five period of Gastrodia elata | 85.120 | |
| SRR5643663 | five period of Gastrodia elata | 77.530 | |
| SRR5643664 | five period of Gastrodia elata | 73.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 49.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 82.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 56.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 55.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 57.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 45.920 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 48.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 45.910 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 48.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 49.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 65.330 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 65.330 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 99.26 |
| Juven | Juvenile tuber | 83.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 77.23 | |
| Mother_Juven | Mother tuber of Juvenile | 69.65 |