Gene detail

Detail information of GWHGAAEX011783/evm.TU.scaffold_4.94

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0823	9.00E-36	Predicted E3 ubiquitin ligase
nr	gi\|743826716\|ref\|XP_010933375.1\|	2.66E-179	PREDICTED: uncharacterized protein LOC105053788 [Elaeis guineensis]
Swissprot	tr\|Q8GUK7\|RMA3_ARATH	5.00E-24	E3 ubiquitin-protein ligase RMA3
trEMBL	tr\|M0T360\|M0T360_MUSAM	1.00E-119	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P01120_001}
TAIR	AT3G58030	9.00E-36	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	1986294	1988129	+

Transcript Sequence
>GWHTAAEX011783 ATGGCCGACGAGGGCGGAGAGAGCAGAGCCGGCGATATGGATCTGAATCTGTATCTGGGCCTTCCTCGTTCGCCCCGTCCCCGGAGTCTCGACTTGGGCTCCGATCTCGCCCTCAGCTCGTTGCCGCTTTCCGCATCTTCTAATTCTGAAGAAAGCCGAGCTCCTGAGGCTGTTTCAGTCGCCGCCATGGAGGCATCGGCTTCGAATGCCCCTTATTCTCCCTCCCATGCTGCGATTGTAGATGCAGATGCGCTGTTGGCTGGATTCAGAGCACCCACTGATGCCAATCCAAGCCATGACTATGCAACTTGCTTTGCTTCTTATGAACCTTATGTGACTGAAGGTCAGAGCATGCCTTACTCTCCATCTAATGCCCAGACGGTGCCCATTGGCCATGAGTTTGGGGAAACAGACGAAAGGGATGGAGTCGCTCCAACTGCCTTTGATGACGGCTCTCCGGTTGATTCTTATGCTGAGGGAAGTGGCTCTCATCCTCCTTACTCGCCGCCCTACCTGGCTGCTGAGAACGTGCATGAAGAAGAAAGATTCATGCCATTTTCTTCTATTCCACTCCAGATTGGCGGAAGCTTCGCCGCACAAGGAGATGGGCCATCTTCGCAGCAGGAACTTCTTAGGTCGCCTGAGTTTAGGATTCGAAGATTGATTGAATCTCATCAGTATAGACTCAGGCGGTTTAGGACATCACTCTCTTATGGAAATGAAAGATCAAATTTTGTCCAGCCACCACCCTCACCAAACCCCACGGAGCTAATGCAGGACATTATGAATTCGCAGAGGTCGCTAGAAACTAATGGGAAGCATAAGGTGGGTTTTGAGGTAGTGAATGCTGAGAGTTCAGAGGAGGATGTTGATCTAAAGAATAAAAATTCTGCTAATTTTGAATGCAATATATGTTTTGATATGGCAAAAGAGCCAGTTGTCACGTCATGCGGACATTTGTTTTGCTGGTCTTGTTTGTATCAGTGGCTTCATGTCCATTCTGACAATAAGGAGTGTCCAGTGTGCAAGGGAGAGGTGACTGAAGCAAATATTGTTCCTATCTACGGGAGGGGGAGCTCTGGTTTGGATGCAGAGAAGACGGATGCCGTTAATTTTGATTCGGACCTGAAAATTCCTCCAAGGCCACGTGGAAATCGCTTGGAGAGCTGGAGGCAGCATCTGCGGCCAATCACACGAAGGTTTGGAGAGGGTATTACAAATTCATGGAGGCGTCTTCTGAATCACCAAATGCGCAATCGCAGCAGATTTGGGGGTCATGAAGAGGCCTTGGTGCAGGAGATGTTGAATGGGGGTTCCCATGCGGTTCTCACTAGATCTATGGCACGAAGACTGCATAGGGATGAGAGTACTGCTGCAAATGTGCCCAGTGCTGATGATGTTAGATTTTCTAGGGATAGTTCATCTATTCCGTCTTTAGTTTTCCCGGAAGGAAATGATATTTGGCAAAGGTTGTATGGTTTTTCTGGCAGTGATAGATTAGCAGCTGTGTCTGCTGACATAGGACGAGCGGTTGGAAGGTTTGCTAGCAATAGTAATCGTTATGGCCCCTCTACTTCTTCAATCAACGCCTCAAATACCGAGCATTTTTCAGGCCGACGCAGTGCTGGAGCAACGGCAACTGCCGATCAGGCGTCGGCTTCAAGCACAGTGGCTGTTATACAAGGTGAAAGCTCTGCTAGAGCTGCTTCAGCAGAGCCTAATAGTGCTGGTTCTTCTAGGCCTTATAGAAGGAGAGGAAGAAGCAATGCTTCTGGTTCATCAGATGTGGATGGAGGTGGAGCCCTTCATGCTCGTAAGAGGAGAAGGATTAACTGA

Network for GWHGAAEX011783

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module13

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.5	zf-C3HC4_3	300	348	3.80E-10

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
K10666	RNF5	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	118.520
SRP064423	SRR2545915	Juvenile tuber	66.180
SRP108465	SRR5643513	five period of Gastrodia elata	164.370
	SRR5643514	five period of Gastrodia elata	127.150
	SRR5643515	five period of Gastrodia elata	207.630
	SRR5643524	five period of Gastrodia elata	127.920
	SRR5643525	five period of Gastrodia elata	289.310
	SRR5643528	five period of Gastrodia elata	271.240
	SRR5643658	five period of Gastrodia elata	198.620
	SRR5643659	five period of Gastrodia elata	123.750
	SRR5643660	five period of Gastrodia elata	84.010
	SRR5643661	five period of Gastrodia elata	84.890
	SRR5643662	five period of Gastrodia elata	134.130
	SRR5643663	five period of Gastrodia elata	83.490
	SRR5643664	five period of Gastrodia elata	272.460
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	260.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	230.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	214.360
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	220.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	270.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	346.200
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	395.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	292.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	143.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	334.680
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	226.950
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	226.950
SRP279888	Gastro	Gastrodia elata tuber	74.71
	Juven	Juvenile tuber	59.15
	Mother_Gastro	Mother tuber of Gastrodia elata	198.41
	Mother_Juven	Mother tuber of Juvenile	107.43