Gene detail

Detail information of GWHGAAEX011788/evm.TU.scaffold_4.99

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|434404094\|ref\|YP_007146979.1\|	chaperonin GroL [Cylindrospermum stagnale PCC 7417]
KOG	KOG0356	Mitochondrial chaperonin, Cpn60/Hsp60p
nr	gi\|672166592\|ref\|XP_008803228.1\|	PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Phoenix dactylifera]
Swissprot	tr\|P08927\|RUBB_PEA	RuBisCO large subunit-binding protein subunit beta, chloroplastic (Precursor)
trEMBL	tr\|D7U0E8\|D7U0E8_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI36094.3}
TAIR	AT3G13470	TCP-1/cpn60 chaperonin family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	2080130	2086253	+

Transcript Sequence
>GWHTAAEX011788 GTTCTCATTTATTTATTTTGTTAATTTAAAGGTTTCCTTAGGGTTTATTATTTAAGCACTTCGGATATCTACCATCGTTAGCCCTCGCCGTCGCCCTGCGGAAAGTCCTTAATCTTCTCTGCGATTTTGCACGCTTTTCCTTTTACGTCGACAATCGACTGCCTACCATTGGAAATGGCAACCACTTTCAATACAGTTTCCCCAACTGGCTTTTTGACTAGCTGTGGTCTCCCAGCAGACAAAAAATTCTCATCTTCTTCGACAAATTTATCACAATTTTCTTTTCTAGCTTCTATTTCTTCCCATTGCCTCAGTAACCGGAAACAAAGCTTAAGTCTACATAAGAGGCGCAACACATGCATAAGAGCAATGGCAAAGGAACTATACTTTAACAAGGATGGATCGGCTATTAAAAAGTTGCAAACTGGTGTCAACAAGCTTGCAGATCTTGTTGGAGTTACTCTTGGTCCAAAGGGTAGGAATGTTGTTCTGGAGAGCAAGTTTGGATCTCCTAAGATTGTGAATGATGGTGTTACTGTGGCAAAAGAGGTTGAGTTGGAGGATCCTGTTGAAAACATCGGTGCAAAACTGGTCAGGCAAGCTGCTTCTAAAACAAATGACCTCGCCGGCGATGGTACTACGACATCTGTGGTTCTAGCGCAAGGTTTGATCGCAGAAGGAGTTAAGGTGGTCGCAGCTGGTGCGAATCCAGTTCAAATCACCAGAGGCATTGAAAAGACTTCAAAAGCTCTTGTAGCTGAACTCAAGCTAATTTCAAAAGAGGTTGAAGATAGTGAACTTGCTGATGTTGCTGCGGTGAGTGCTGGAAACAGTTATGAAATTGGAAACATGATAGCTGAGGCTATGAGCAAGGTAGGAAGGAAGGGTGTGGTGACACTCGAAGAGGGAAAGAGTGCGGAGAATAGCCTTTATGTTGTAGAAGGAATGCAATTTGATCGCGGCTATATATCTCCATATTTTGTAACTGATAGTGAGAAGATGACAGTTGAATATGAGAATTGCAAGTTGCTTCTTGTTGACAAGAAAATCACAACTGCAAGAGATTTGATCAATGTTCTTGAAGATGCAATTAGAGGGGGGTATCCTATTGTTATTGTTGCCGAAGATATTGAACAGGAAGCTCTGGCAACTCTTGTTGTGAACAAGCTAAGGGGAACTCTAAAGATTGCTGCTCTAAAAGCTCCGGGATTTGGAGAGCGTAAAAGCCAATATCTTGATGATATTGCAATCCTTACTGGAGCAACCGTCATTAGAGATGAGGTTGGCCTTACTCTGGATAAAGCCGATAAAGAGGTGTTAGGAACTGCTGCCAAAATTGTGCTAAACAAAGATTCTACCACCATAGTAGGCGATGGAAGCACAGAGGAAGTAGTAAAAAAGAGAGTTGAACAAATTCGAAACTTGATTGAGGCTGCAGAACAGGATTATGAGAAAGAGAAATTGAATGAGAGGATTGCAAAGCTCTCTGGAGGTGTTGCTGTCATCCAGGTTGGAGCACAAACAGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTGGAAGATGCTCTCAATGCCACAAAGGCTGCAGTGGAGGAAGGTATTGTTGTTGGCGGTGGATGTACACTTCTGAGGCTGGCTTCAAAAGTTGATTTCATCAAGGAAACTCTTGAAAATGAAGAGCAGAAGATTGGTGCAGAAATTGTCAGGAGAGCTCTGAGCTATCCTCTCAAATTGATTGCAAAAAATGCTGGTGTGAATGGAAGTGTTGTGGTTGAGAAGGTGCTTTCCAGTGACAATCCCAAGTATGGTTACAATGCTGCTACAGGAAAGTACGAGGACCTAATGGCTGCAGGAATCATTGATCCTACGAAGGTTGTGAGGTGCTGCTTGGAACATGCATCATCTGTGGCAAAGACATTCTTGATCTCTGATGCCGTTGTGGTCGATATCAAGGAACCCGAACCAGTTGCTGCCGGGAACCCTATGAGCAATTCAGGTTATGACTACTAAATGAGAGAGTTCATGGCTGGGATGCTGATCAGAAGTGCCTTTTATCCACAGCTTAATTGGCAGAATTTTCTTATCAATTATTAGGTATTCAGGGTTTTTGTGTTTTAAAATATATGAAGAAATCTCTATCTTGGCTGAGTTTGTACTGATTGAATGATTATCAGAATGGTATAATGATTATTAGCGGGATTCACTGCATCAATGTTAAGCCAGGGTTTGTTAACAAAAAATTTTATTATTATCATTTTTGTCTGATTCAGCATAATTTGCAATTAAAGGGATTTAACATTGCTGTCTTATGTGGTCTGGTTTAAGTTTAAAGTTTT

Network for GWHGAAEX011788

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00118.23	Cpn60_TCP1	89	592	4.00E-104

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04077	groEL, HSPD1	RNA degradation	map03018
K04077	groEL, HSPD1	Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0042026	Biological Process	protein refolding
GO:0006457	Biological Process	protein folding
GO:0005524	Molecular Function	ATP binding
GO:0005737	Cellular Component	cytoplasm

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	117.280
SRP064423	SRR2545915	Juvenile tuber	184.750
SRP108465	SRR5643513	five period of Gastrodia elata	140.920
	SRR5643514	five period of Gastrodia elata	145.770
	SRR5643515	five period of Gastrodia elata	148.190
	SRR5643524	five period of Gastrodia elata	127.900
	SRR5643525	five period of Gastrodia elata	41.770
	SRR5643528	five period of Gastrodia elata	48.020
	SRR5643658	five period of Gastrodia elata	31.040
	SRR5643659	five period of Gastrodia elata	162.380
	SRR5643660	five period of Gastrodia elata	151.960
	SRR5643661	five period of Gastrodia elata	167.130
	SRR5643662	five period of Gastrodia elata	158.760
	SRR5643663	five period of Gastrodia elata	174.130
	SRR5643664	five period of Gastrodia elata	143.540
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	174.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	130.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	178.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	150.390
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	119.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	83.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	144.270
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	160.400
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	248.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	167.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	185.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	185.520
SRP279888	Gastro	Gastrodia elata tuber	181.88
	Juven	Juvenile tuber	187.77
	Mother_Gastro	Mother tuber of Gastrodia elata	36.52
	Mother_Juven	Mother tuber of Juvenile	85.87