Detail information of GWHGAAEX011794/evm.TU.scaffold_4.106
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
KOG | KOG3456 | 1.00E-44 | NADH:ubiquinone oxidoreductase, NDUFS6/13 kDa subunit |
nr | gi|743859411|ref|XP_010942737.1| | 2.11E-52 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial-like [Elaeis guineensis] |
Swissprot | tr|Q9M9M6|NDUS6_ARATH | 4.00E-45 | NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial (Precursor) |
trEMBL | tr|M0SIC7|M0SIC7_MUSAM | 1.00E-46 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P27610_001} |
TAIR | AT3G03070 | 1.00E-44 | NADH-ubiquinone oxidoreductase-related |
Location And Transcript Sequence
Scaffold | Start | End | Strand |
---|---|---|---|
GWHAAEX00000011 | 2236538 | 2241535 | - |
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Transcript Sequence | |||
Network for GWHGAAEX011794
Network category | Network | Top300 PCC genelist |
---|---|---|
Coexpression Positive | Network | Top300 PCC genelist |
Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
Module ID | Function Annotation |
---|
Protein Structure
Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|
PF10276.8 | zf-CHCC | 61 | 98 | 2.70E-15 |
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Protein Sequence |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | pathway | mapID |
---|---|---|---|
K03939 | NDUFS6 | Metabolic pathways | map01100 |
Oxidative phosphorylation | map00190 | ||
Retrograde endocannabinoid signaling | map04723 | ||
Thermogenesis | map04714 |
Gene Ontology
GO term | Ontology | Name |
---|
Expression pattern
SRP | Sample | Description | FPKM |
---|---|---|---|
SRP064423 | SRR2545914 | vegetative propagation corms | 26.730 |
SRR2545915 | Juvenile tuber | 45.640 | |
SRP108465 | SRR5643513 | five period of Gastrodia elata | 92.190 |
SRR5643514 | five period of Gastrodia elata | 174.810 | |
SRR5643515 | five period of Gastrodia elata | 117.230 | |
SRR5643524 | five period of Gastrodia elata | 164.970 | |
SRR5643525 | five period of Gastrodia elata | 120.700 | |
SRR5643528 | five period of Gastrodia elata | 168.950 | |
SRR5643658 | five period of Gastrodia elata | 104.340 | |
SRR5643659 | five period of Gastrodia elata | 86.550 | |
SRR5643660 | five period of Gastrodia elata | 69.420 | |
SRR5643661 | five period of Gastrodia elata | 78.650 | |
SRR5643662 | five period of Gastrodia elata | 82.830 | |
SRR5643663 | five period of Gastrodia elata | 82.700 | |
SRR5643664 | five period of Gastrodia elata | 73.470 | |
SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 59.130 |
SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 129.810 | |
SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 66.950 | |
SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 50.960 | |
SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 41.550 | |
SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 39.030 | |
SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 42.570 | |
SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 42.880 | |
SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 95.830 | |
SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 71.000 | |
SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 117.340 | |
SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 117.340 | |
SRP279888 | Gastro | Gastrodia elata tuber | 93.02 |
Juven | Juvenile tuber | 131.32 | |
Mother_Gastro | Mother tuber of Gastrodia elata | 175.46 | |
Mother_Juven | Mother tuber of Juvenile | 157.57 |