Detail information of GWHGAAEX011795/evm.TU.scaffold_4.107
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-165 | FOG: PPR repeat |
| nr | gi|672171515|ref|XP_008805829.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q9M8W9|PP211_ARATH | 2.00E-167 | Pentatricopeptide repeat-containing protein At3g04130, mitochondrial (Precursor) |
| trEMBL | tr|M0S327|M0S327_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P25700_001} |
| TAIR | AT3G04130 | 2.00E-165 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 2243855 | 2254351 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011795
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 187 | 234 | 1.70E-09 |
| PF13041.5 | PPR_2 | 256 | 304 | 6.80E-15 |
| PF13041.5 | PPR_2 | 326 | 376 | 2.40E-13 |
| PF12854.6 | PPR_1 | 435 | 463 | 1.40E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.850 |
| SRR2545915 | Juvenile tuber | 12.930 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.740 |
| SRR5643514 | five period of Gastrodia elata | 5.930 | |
| SRR5643515 | five period of Gastrodia elata | 6.350 | |
| SRR5643524 | five period of Gastrodia elata | 5.810 | |
| SRR5643525 | five period of Gastrodia elata | 6.690 | |
| SRR5643528 | five period of Gastrodia elata | 6.250 | |
| SRR5643658 | five period of Gastrodia elata | 5.790 | |
| SRR5643659 | five period of Gastrodia elata | 7.960 | |
| SRR5643660 | five period of Gastrodia elata | 7.470 | |
| SRR5643661 | five period of Gastrodia elata | 6.900 | |
| SRR5643662 | five period of Gastrodia elata | 8.950 | |
| SRR5643663 | five period of Gastrodia elata | 8.630 | |
| SRR5643664 | five period of Gastrodia elata | 7.700 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.830 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.280 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.510 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.08 |
| Juven | Juvenile tuber | 16.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.76 | |
| Mother_Juven | Mother tuber of Juvenile | 23.08 |