Gene detail

Detail information of GWHGAAEX011798/evm.TU.scaffold_4.111

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|116251342\|ref\|YP_767180.1\|	2.00E-143	ABC transporter ATP-binding protein [Rhizobium leguminosarum bv. viciae 3841]
KOG	KOG0062	0	ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b
nr	gi\|672114767\|ref\|XP_008778513.1\|	0	PREDICTED: ABC transporter F family member 3 [Phoenix dactylifera]
Swissprot	tr\|Q8H0V6\|AB3F_ARATH	0	ABC transporter F family member 3
trEMBL	tr\|D7TVM3\|D7TVM3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34548.3}
TAIR	AT1G64550	0	general control non-repressible 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	2309882	2346998	+

Transcript Sequence
>GWHTAAEX011798 ATTCACTACCCAAATTTTAAGAAAATTTATCCATCGTCTTCTCCTTTCCCCGAATCCGCTGCTGCACCGCAGTGCACTGGTCGATGCCATCCCTGTGATTTGCGGTCGAACAGAGGTCAACGGAAATGACGGCACCGGCAGTGGCTGCCTCGGTGGTTCACGATGTTCTAGGATGGAGAGCTCAGGACGTCGATAAGCCCATAATCGACTATATAATCAACGTTCTCGCCGACGAGGACTTCGATTTCGGAATCGACGGAGACGGAGCATACGATGCTGTCGGAGAGCTGCTCGTCGACTCTGGATGCGTCGGAGATACTTCCGAGGGTCGCTTGGTCTGCAGCATGCTCTCAGAGAAGTTTGGCAAACATGGATTGGCAAAACCTAAGCAGGCTGTGCGGAGCCTTGCTACACCTGTGCGTATGTTTGAGGGAATGGATGAAGTTGTACCCCCAAAGAAAGAAGCAGAGGTTCTTGAAGGGCCTGTACTTTCTGAACGTGATCGAGCAAAGATTGAAAGAAGAAAGAGAAAAGATGAAAGACAAAGAGAGGCCCAGTATCAAATGCATTTGGCAGAGATGGAAGCTATCAAAGAAGGGATGCCTGTTGTTTGTGTTAATCATGATAGCGATAGTGGGGCAGCTATTAGGGATATTCATATGGAGAACTTTACTGTATCTGTTGGTGGTCGTGATCTTATTAAAGATTGTTCTGTGACCCTTTCGTTTGGAAGGCACTATGGTCTTGTTGGAAGAAATGGAACTGGTAAAACTTCCTTCCTGAGGCATATGGCCTTGCATGCTATGGAGGGCATTCCAAGGAACTGTCAAATTCTGCATGTAGAACAAGAAGTTGTGGGTGATGACACTTCAGCATTGCAATGTGTTCTAAATTCTGATATTGAGAGGATTCAATTGTTAAACGAAGAAGCTAGGCTACTTGCACAACAGAGGGATGTAGAATATGAAGAAGAAGTGGGGACAAATAATGGGAAGCATGCTGGGAATGATAAGGATTCAATTGCAATAAGGCTTGAACAAATATATAAAAGACTTGAATTTATTGATGCATATTCTGCGGAGTCTCGTGCAGCTTCAATTTTGGCGGGCCTTAGCTTCACAACAGAAATGCAAAAGCGACCCACTAAAGCCTTTTCTGGTGGATGGCGCATGCGCATAGCCCTTGCACGTGCCTTATTTATTGAGCCTGATTTGCTATTGCTTGATGAGCCAACGAATCACTTGGATCTTCATGCTGTATTGTGGTTAGAGTTGTACCTTACAAAATGGCCAAAAACATTTATTGTAGTTTCTCACGCCAGAGAGTTTTTAAATACGGTAGTTACAGATATCCTTCATCTGCATGGACAAAACTTGACTGCATACAAAGGCGACTACGACACATTTGAGAGGACAAGAGAGGAGCAACTTAAAAATCAACAAAAGGCTTTTGAAACTAGTGAAAAGGCCAGGGCTCATATGCAGGCTTTTATTGATAAGTTCCGTTACAATGCAAAGCGTGCATCACTTGTACAGTCAAGAATTAAGGCATTGGATAGAATGGGCCATATGGATCAAGTCATCAACGATCCAGATTACAAATTCGACTTCCCTACACCGGATGATCGGCCTGGTCCACCAATTATAAGTTTCAATGATGCGTCATTTGGTTATCCTGGAGGACCTACTTTGTTTAAAAACCTGAATTTTGGTATAGACCTGGACAGCCGCATAGCAATGGTCGGTCCAAATGGCATTGGCAAGTCAACTATACTCAAACTAATAGCTGGAGAACTTCAGCCAACTTCTGGAACTGTTTTCCGTTCAGCTAAGGTTCGAATGGCTGTTTTCAGTCAACATCATGTTGATGGGCTTGATTTGTCTTCAAATCCACTTTTGTATATGATGCGTTGCTACCCTGGAGTACCTGAACAGAAACTGAGAGCGCACTTAGGCTCTTTTGGTGTCACTGGAAACCTTGCACTTCAGCCGATGTATACTTTGTCAGGTGGACAGAAGAGCAGAGTTGCATTTGCAAAGATCACCTTCAAGAAACCACATATAATTCTTCTCGATGAGCCATCGAACCATCTTGATCTTGATGCAGTTGAGGCACTCATCCAAGGGCTGGTTCTCTACCAAGGCGGCGTCCTAATGGTGAGCCACGACGAGCATCTAATCTCGGGAAGCGTGGGCGAGCTTTGGGCTGTTTCTGAGGGGACGGTCACCCCTTTCTCCGGCACCTTTCAAGATTACAAGAAGATGGTCAAATCCTCAGGGCATTGATTTTTTATTTTTTTTTGGCAAACCCTAAAACCATAAAGCTGTTGCTTCACCATTCTGATTCTTTGGTGATTTGGCTCTTTTAAGGTTTTATTATTGGTTGGATGAGAGGAGCCGTTAAAAGTACAGTTATTATTTCCTTGTATTTTTAAAATAAATTAAAAAAGAAATTTATTTTGTTTGCAAATAGTTGTGCCTTGATTAGTCAAAAATATAATAGTGTCATATCTTAATCTTGTTGACTTGAAAATTAATTTAATGTTGAA

Network for GWHGAAEX011798

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	193	371	3.90E-19
PF12848.6	ABC_tran_Xtn	410	490	1.70E-23
PF00005.26	ABC_tran	524	654	8.40E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	65.640
SRP064423	SRR2545915	Juvenile tuber	56.960
SRP108465	SRR5643513	five period of Gastrodia elata	52.080
	SRR5643514	five period of Gastrodia elata	58.000
	SRR5643515	five period of Gastrodia elata	49.280
	SRR5643524	five period of Gastrodia elata	55.700
	SRR5643525	five period of Gastrodia elata	58.130
	SRR5643528	five period of Gastrodia elata	57.870
	SRR5643658	five period of Gastrodia elata	74.600
	SRR5643659	five period of Gastrodia elata	40.290
	SRR5643660	five period of Gastrodia elata	41.260
	SRR5643661	five period of Gastrodia elata	40.810
	SRR5643662	five period of Gastrodia elata	39.640
	SRR5643663	five period of Gastrodia elata	39.570
	SRR5643664	five period of Gastrodia elata	39.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	65.020
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	64.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	63.220
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	66.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	68.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	73.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	68.500
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	64.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	60.970
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	63.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	67.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	67.380
SRP279888	Gastro	Gastrodia elata tuber	48.60
	Juven	Juvenile tuber	62.56
	Mother_Gastro	Mother tuber of Gastrodia elata	54.54
	Mother_Juven	Mother tuber of Juvenile	64.32